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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623225_s_at:

>probe:Drosophila_2:1623225_s_at:225:123; Interrogation_Position=2443; Antisense; AGCGACGATTGCTCTTCTAGCTCGT
>probe:Drosophila_2:1623225_s_at:675:637; Interrogation_Position=2464; Antisense; TCGTCTTCGTCCTCCTGGAATATGA
>probe:Drosophila_2:1623225_s_at:24:49; Interrogation_Position=2485; Antisense; ATGACTTAAGGTCCCGAGCAGTAGC
>probe:Drosophila_2:1623225_s_at:438:25; Interrogation_Position=2552; Antisense; ATAGTGCGCCCTGATTTCGATATAA
>probe:Drosophila_2:1623225_s_at:8:207; Interrogation_Position=2576; Antisense; AAGCTTAATGCGTACCGCTCTGATG
>probe:Drosophila_2:1623225_s_at:123:639; Interrogation_Position=2612; Antisense; TCGTCGTTGCTACAAACTGCCATTA
>probe:Drosophila_2:1623225_s_at:357:419; Interrogation_Position=2650; Antisense; GAGCAGCATGACTTACGATTAGCAT
>probe:Drosophila_2:1623225_s_at:410:41; Interrogation_Position=2742; Antisense; ATCGATTCGTTCTCAGATTTCTTTT
>probe:Drosophila_2:1623225_s_at:353:445; Interrogation_Position=2788; Antisense; GATGCGAATTAATATTTCCGGCCTA
>probe:Drosophila_2:1623225_s_at:280:15; Interrogation_Position=2801; Antisense; ATTTCCGGCCTATATTAGCGACTCT
>probe:Drosophila_2:1623225_s_at:726:403; Interrogation_Position=2820; Antisense; GACTCTTCTCGATCTTTTCATTTAT
>probe:Drosophila_2:1623225_s_at:340:183; Interrogation_Position=2846; Antisense; AAAAGTGCGATCGACCTGCTTGGTT
>probe:Drosophila_2:1623225_s_at:585:459; Interrogation_Position=2896; Antisense; GATTTGTTCTATGCAGTTTCCGACA
>probe:Drosophila_2:1623225_s_at:543:407; Interrogation_Position=2941; Antisense; GACGTAATTGATACCCAGCAGACAC

Paste this into a BLAST search page for me
AGCGACGATTGCTCTTCTAGCTCGTTCGTCTTCGTCCTCCTGGAATATGAATGACTTAAGGTCCCGAGCAGTAGCATAGTGCGCCCTGATTTCGATATAAAAGCTTAATGCGTACCGCTCTGATGTCGTCGTTGCTACAAACTGCCATTAGAGCAGCATGACTTACGATTAGCATATCGATTCGTTCTCAGATTTCTTTTGATGCGAATTAATATTTCCGGCCTAATTTCCGGCCTATATTAGCGACTCTGACTCTTCTCGATCTTTTCATTTATAAAAGTGCGATCGACCTGCTTGGTTGATTTGTTCTATGCAGTTTCCGACAGACGTAATTGATACCCAGCAGACAC

Full Affymetrix probeset data:

Annotations for 1623225_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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