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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623227_s_at:

>probe:Drosophila_2:1623227_s_at:68:377; Interrogation_Position=2799; Antisense; GAAGCATTTGTTGACGCACTGTTGT
>probe:Drosophila_2:1623227_s_at:536:709; Interrogation_Position=2853; Antisense; TTAAGTCGCTAGACCGAACGCTGGC
>probe:Drosophila_2:1623227_s_at:615:101; Interrogation_Position=2863; Antisense; AGACCGAACGCTGGCATGGATGGCA
>probe:Drosophila_2:1623227_s_at:207:77; Interrogation_Position=2910; Antisense; AGGAGGCACTCTACGCAAACACAAA
>probe:Drosophila_2:1623227_s_at:688:301; Interrogation_Position=2975; Antisense; CCTAACAAACGTTTACCACATCACA
>probe:Drosophila_2:1623227_s_at:112:181; Interrogation_Position=3025; Antisense; AAAACCCGGCGATCCAGCAATCTGG
>probe:Drosophila_2:1623227_s_at:179:581; Interrogation_Position=3054; Antisense; TGGCCAATGCCAATCACAACATAAT
>probe:Drosophila_2:1623227_s_at:503:31; Interrogation_Position=3074; Antisense; ATAATCTGATCATGGCGACGAGCAC
>probe:Drosophila_2:1623227_s_at:178:325; Interrogation_Position=3088; Antisense; GCGACGAGCACTGATGATGAACTAT
>probe:Drosophila_2:1623227_s_at:4:21; Interrogation_Position=3127; Antisense; ATTTGATTCAAAGGCGGCAGCACGC
>probe:Drosophila_2:1623227_s_at:278:567; Interrogation_Position=3142; Antisense; GGCAGCACGCTGAACTTGTAAATAC
>probe:Drosophila_2:1623227_s_at:76:447; Interrogation_Position=3194; Antisense; GATGCCTAGTAATACCAACCCTGAA
>probe:Drosophila_2:1623227_s_at:696:705; Interrogation_Position=3269; Antisense; TTACATAAACGCAACGTTGCCCCTT
>probe:Drosophila_2:1623227_s_at:238:469; Interrogation_Position=3284; Antisense; GTTGCCCCTTATGCATGAACTTTAT

Paste this into a BLAST search page for me
GAAGCATTTGTTGACGCACTGTTGTTTAAGTCGCTAGACCGAACGCTGGCAGACCGAACGCTGGCATGGATGGCAAGGAGGCACTCTACGCAAACACAAACCTAACAAACGTTTACCACATCACAAAAACCCGGCGATCCAGCAATCTGGTGGCCAATGCCAATCACAACATAATATAATCTGATCATGGCGACGAGCACGCGACGAGCACTGATGATGAACTATATTTGATTCAAAGGCGGCAGCACGCGGCAGCACGCTGAACTTGTAAATACGATGCCTAGTAATACCAACCCTGAATTACATAAACGCAACGTTGCCCCTTGTTGCCCCTTATGCATGAACTTTAT

Full Affymetrix probeset data:

Annotations for 1623227_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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