FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623243_at:

>probe:Drosophila_2:1623243_at:693:233; Interrogation_Position=1205; Antisense; AATCCCTGGGACACCTTAATTGTGG
>probe:Drosophila_2:1623243_at:236:607; Interrogation_Position=1230; Antisense; TGAGTGCGGATCACGGACACACGGT
>probe:Drosophila_2:1623243_at:179:397; Interrogation_Position=1245; Antisense; GACACACGGTCACGATCAGCGGCTA
>probe:Drosophila_2:1623243_at:525:121; Interrogation_Position=1262; Antisense; AGCGGCTATCCGGATGTTAACAACA
>probe:Drosophila_2:1623243_at:116:219; Interrogation_Position=1312; Antisense; AAGTAATGTGGACCAGCTGCCCTAC
>probe:Drosophila_2:1623243_at:626:319; Interrogation_Position=1359; Antisense; GCCCGGCCTACGAGAGATTCTACAA
>probe:Drosophila_2:1623243_at:658:467; Interrogation_Position=1409; Antisense; GTTGATCTCCGTAACCTGGACTTTT
>probe:Drosophila_2:1623243_at:154:587; Interrogation_Position=1425; Antisense; TGGACTTTTCCAAACCGGATGCCAT
>probe:Drosophila_2:1623243_at:688:545; Interrogation_Position=1441; Antisense; GGATGCCATCTATCCACATGGAGTG
>probe:Drosophila_2:1623243_at:716:65; Interrogation_Position=1458; Antisense; ATGGAGTGCCCATGACCGAGGAGAC
>probe:Drosophila_2:1623243_at:706:441; Interrogation_Position=1496; Antisense; GATGTGGCCGTCTATGCTCATGGTC
>probe:Drosophila_2:1623243_at:395:269; Interrogation_Position=1521; Antisense; CATGGTCTCATCTTTTCACTGGAGT
>probe:Drosophila_2:1623243_at:440:173; Interrogation_Position=1554; Antisense; AAAGCACCTTGCCTCATTTGATGGG
>probe:Drosophila_2:1623243_at:135:717; Interrogation_Position=1580; Antisense; TTCGCCTCTTGCTTAGGACCTGGAA

Paste this into a BLAST search page for me
AATCCCTGGGACACCTTAATTGTGGTGAGTGCGGATCACGGACACACGGTGACACACGGTCACGATCAGCGGCTAAGCGGCTATCCGGATGTTAACAACAAAGTAATGTGGACCAGCTGCCCTACGCCCGGCCTACGAGAGATTCTACAAGTTGATCTCCGTAACCTGGACTTTTTGGACTTTTCCAAACCGGATGCCATGGATGCCATCTATCCACATGGAGTGATGGAGTGCCCATGACCGAGGAGACGATGTGGCCGTCTATGCTCATGGTCCATGGTCTCATCTTTTCACTGGAGTAAAGCACCTTGCCTCATTTGATGGGTTCGCCTCTTGCTTAGGACCTGGAA

Full Affymetrix probeset data:

Annotations for 1623243_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720