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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623257_a_at:

>probe:Drosophila_2:1623257_a_at:135:195; Interrogation_Position=2812; Antisense; AACTGTCTGAAATCATTGCTTCCCT
>probe:Drosophila_2:1623257_a_at:422:7; Interrogation_Position=2826; Antisense; ATTGCTTCCCTGCTTACATCAAAAT
>probe:Drosophila_2:1623257_a_at:275:343; Interrogation_Position=2837; Antisense; GCTTACATCAAAATACCCCAGTTCA
>probe:Drosophila_2:1623257_a_at:79:531; Interrogation_Position=2892; Antisense; GGGATTTCTGTCTCGACTAGCACTC
>probe:Drosophila_2:1623257_a_at:128:355; Interrogation_Position=2911; Antisense; GCACTCCTTCTGCTGATCAAGTATT
>probe:Drosophila_2:1623257_a_at:201:373; Interrogation_Position=2959; Antisense; GAAGTTGCAGACATGGCACTGGAAC
>probe:Drosophila_2:1623257_a_at:711:561; Interrogation_Position=2979; Antisense; GGAACTGGCCTTTACGTTCATGATA
>probe:Drosophila_2:1623257_a_at:125:619; Interrogation_Position=3007; Antisense; TGCAGAGAGCACTTCAATCGGCTTA
>probe:Drosophila_2:1623257_a_at:465:225; Interrogation_Position=3022; Antisense; AATCGGCTTACTCTCACAGTAATGA
>probe:Drosophila_2:1623257_a_at:454:249; Interrogation_Position=3060; Antisense; CAATTTTGTGATTTGTTCGCCCTGG
>probe:Drosophila_2:1623257_a_at:726:373; Interrogation_Position=3093; Antisense; GAAGATACCACAGTTGGCCGACGTG
>probe:Drosophila_2:1623257_a_at:238:9; Interrogation_Position=3214; Antisense; ATTCCTCCGATGACAATTCTAGCGA
>probe:Drosophila_2:1623257_a_at:211:369; Interrogation_Position=3318; Antisense; GAATGTCATTCCCTAATTAGTTACT
>probe:Drosophila_2:1623257_a_at:512:183; Interrogation_Position=3359; Antisense; AAAAGCGGATTTCGAGATTTCTCAA

Paste this into a BLAST search page for me
AACTGTCTGAAATCATTGCTTCCCTATTGCTTCCCTGCTTACATCAAAATGCTTACATCAAAATACCCCAGTTCAGGGATTTCTGTCTCGACTAGCACTCGCACTCCTTCTGCTGATCAAGTATTGAAGTTGCAGACATGGCACTGGAACGGAACTGGCCTTTACGTTCATGATATGCAGAGAGCACTTCAATCGGCTTAAATCGGCTTACTCTCACAGTAATGACAATTTTGTGATTTGTTCGCCCTGGGAAGATACCACAGTTGGCCGACGTGATTCCTCCGATGACAATTCTAGCGAGAATGTCATTCCCTAATTAGTTACTAAAAGCGGATTTCGAGATTTCTCAA

Full Affymetrix probeset data:

Annotations for 1623257_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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