FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623424_a_at:

>probe:Drosophila_2:1623424_a_at:654:181; Interrogation_Position=3114; Antisense; AAAACCAGCCACAACAGATCATTAG
>probe:Drosophila_2:1623424_a_at:674:455; Interrogation_Position=3148; Antisense; GATAACTCTTTTAGGCACTAACCAA
>probe:Drosophila_2:1623424_a_at:58:365; Interrogation_Position=3225; Antisense; GAATCAAACGATTTGGCGCGCCGCC
>probe:Drosophila_2:1623424_a_at:617:687; Interrogation_Position=3282; Antisense; TATTGCTGCTGCTGTGCCTCTAAAA
>probe:Drosophila_2:1623424_a_at:416:335; Interrogation_Position=3289; Antisense; GCTGCTGTGCCTCTAAAACTTAATG
>probe:Drosophila_2:1623424_a_at:478:279; Interrogation_Position=3324; Antisense; CTCTCCCATAAGTAGGTATCCATAT
>probe:Drosophila_2:1623424_a_at:190:379; Interrogation_Position=3354; Antisense; GAAGCGCTTCTCTTTGTAATCCTAT
>probe:Drosophila_2:1623424_a_at:224:229; Interrogation_Position=3395; Antisense; AATGTCTACACCAAAACTCTCGACC
>probe:Drosophila_2:1623424_a_at:462:201; Interrogation_Position=3425; Antisense; AACCTGCATCGTCACGCATATTTTT
>probe:Drosophila_2:1623424_a_at:65:19; Interrogation_Position=3460; Antisense; ATTTCATTTACCTTCATATTGCCTG
>probe:Drosophila_2:1623424_a_at:163:691; Interrogation_Position=3476; Antisense; TATTGCCTGTGAACATATCCCTTTA
>probe:Drosophila_2:1623424_a_at:303:683; Interrogation_Position=3491; Antisense; TATCCCTTTATAAATCCTGTTTCTT
>probe:Drosophila_2:1623424_a_at:477:649; Interrogation_Position=3525; Antisense; TAACCAAAGCTTGTTCTTCCTATTT
>probe:Drosophila_2:1623424_a_at:323:473; Interrogation_Position=3537; Antisense; GTTCTTCCTATTTTATTGTAGCCAT

Paste this into a BLAST search page for me
AAAACCAGCCACAACAGATCATTAGGATAACTCTTTTAGGCACTAACCAAGAATCAAACGATTTGGCGCGCCGCCTATTGCTGCTGCTGTGCCTCTAAAAGCTGCTGTGCCTCTAAAACTTAATGCTCTCCCATAAGTAGGTATCCATATGAAGCGCTTCTCTTTGTAATCCTATAATGTCTACACCAAAACTCTCGACCAACCTGCATCGTCACGCATATTTTTATTTCATTTACCTTCATATTGCCTGTATTGCCTGTGAACATATCCCTTTATATCCCTTTATAAATCCTGTTTCTTTAACCAAAGCTTGTTCTTCCTATTTGTTCTTCCTATTTTATTGTAGCCAT

Full Affymetrix probeset data:

Annotations for 1623424_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720