FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623436_a_at:

>probe:Drosophila_2:1623436_a_at:411:493; Interrogation_Position=1233; Antisense; GTAATGTTAACTCAGCCGCAGTCTC
>probe:Drosophila_2:1623436_a_at:321:297; Interrogation_Position=1249; Antisense; CGCAGTCTCTTTCTTAGTCGGAGGA
>probe:Drosophila_2:1623436_a_at:171:567; Interrogation_Position=1345; Antisense; GGCAGACTCACCCAAACATGTTAAG
>probe:Drosophila_2:1623436_a_at:301:475; Interrogation_Position=1375; Antisense; GTTAGGTAGACTAGCCTGCTGTTAA
>probe:Drosophila_2:1623436_a_at:389:363; Interrogation_Position=1400; Antisense; GAATTGTTATGTTGTTGCTGGCTGT
>probe:Drosophila_2:1623436_a_at:264:465; Interrogation_Position=1413; Antisense; GTTGCTGGCTGTTAATCTGCTGCAG
>probe:Drosophila_2:1623436_a_at:202:321; Interrogation_Position=1437; Antisense; GCCGCCGTTTTGTTAATTTCTCGAT
>probe:Drosophila_2:1623436_a_at:266:479; Interrogation_Position=1472; Antisense; GTTTAACACACATACAGACCACCAC
>probe:Drosophila_2:1623436_a_at:405:259; Interrogation_Position=1506; Antisense; CACTCATACGCATTTACACACACAT
>probe:Drosophila_2:1623436_a_at:250:25; Interrogation_Position=1560; Antisense; ATAGACTGCACGCTAACAGCGGCTG
>probe:Drosophila_2:1623436_a_at:431:673; Interrogation_Position=1597; Antisense; TTAACGTCCGCTGTTAACTCGAAGC
>probe:Drosophila_2:1623436_a_at:329:473; Interrogation_Position=1632; Antisense; GTTCTTTTAAATATCGCGCTGCTGC
>probe:Drosophila_2:1623436_a_at:544:283; Interrogation_Position=1653; Antisense; CTGCGCCTCCACATTTTTGTTTAAT
>probe:Drosophila_2:1623436_a_at:324:597; Interrogation_Position=1702; Antisense; TGTTTCCACGTTGTTAACGCTACGA

Paste this into a BLAST search page for me
GTAATGTTAACTCAGCCGCAGTCTCCGCAGTCTCTTTCTTAGTCGGAGGAGGCAGACTCACCCAAACATGTTAAGGTTAGGTAGACTAGCCTGCTGTTAAGAATTGTTATGTTGTTGCTGGCTGTGTTGCTGGCTGTTAATCTGCTGCAGGCCGCCGTTTTGTTAATTTCTCGATGTTTAACACACATACAGACCACCACCACTCATACGCATTTACACACACATATAGACTGCACGCTAACAGCGGCTGTTAACGTCCGCTGTTAACTCGAAGCGTTCTTTTAAATATCGCGCTGCTGCCTGCGCCTCCACATTTTTGTTTAATTGTTTCCACGTTGTTAACGCTACGA

Full Affymetrix probeset data:

Annotations for 1623436_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720