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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623463_at:

>probe:Drosophila_2:1623463_at:554:515; Interrogation_Position=191; Antisense; GTGTAACTGTGTCTGATGTCTGCAA
>probe:Drosophila_2:1623463_at:634:207; Interrogation_Position=247; Antisense; AAGCATCGCTATGTCATCTTTTACA
>probe:Drosophila_2:1623463_at:648:103; Interrogation_Position=299; Antisense; AGACTGTGGCAGATCGCAACGCCGA
>probe:Drosophila_2:1623463_at:729:299; Interrogation_Position=318; Antisense; CGCCGAGTACGACCAGTTTCTAGAA
>probe:Drosophila_2:1623463_at:388:495; Interrogation_Position=369; Antisense; GTGCCGGTACGGACTGTTCGATTTC
>probe:Drosophila_2:1623463_at:570:471; Interrogation_Position=384; Antisense; GTTCGATTTCGAGTACATGCACCAG
>probe:Drosophila_2:1623463_at:600:513; Interrogation_Position=408; Antisense; GTGTCAAGGCACCTCTGAGAGTTCA
>probe:Drosophila_2:1623463_at:161:173; Interrogation_Position=441; Antisense; AAAGCTGTTCCTTATGTCGTGGTGT
>probe:Drosophila_2:1623463_at:111:513; Interrogation_Position=462; Antisense; GTGTCCCGATACTGCCAAGGTCAAG
>probe:Drosophila_2:1623463_at:549:109; Interrogation_Position=488; Antisense; AGAAGATGTTGTACTCCAGCTCCTT
>probe:Drosophila_2:1623463_at:208:53; Interrogation_Position=515; Antisense; ATGCTCTCAAGAAGTCGCTCGTGGG
>probe:Drosophila_2:1623463_at:82:31; Interrogation_Position=553; Antisense; ATACAAGCCACTGATCTTTCCGAAG
>probe:Drosophila_2:1623463_at:71:241; Interrogation_Position=623; Antisense; AATAAACTGTACGAGCACTGTGCAT
>probe:Drosophila_2:1623463_at:612:157; Interrogation_Position=688; Antisense; ACACGTATCCTGTTGAGATCGCCAA

Paste this into a BLAST search page for me
GTGTAACTGTGTCTGATGTCTGCAAAAGCATCGCTATGTCATCTTTTACAAGACTGTGGCAGATCGCAACGCCGACGCCGAGTACGACCAGTTTCTAGAAGTGCCGGTACGGACTGTTCGATTTCGTTCGATTTCGAGTACATGCACCAGGTGTCAAGGCACCTCTGAGAGTTCAAAAGCTGTTCCTTATGTCGTGGTGTGTGTCCCGATACTGCCAAGGTCAAGAGAAGATGTTGTACTCCAGCTCCTTATGCTCTCAAGAAGTCGCTCGTGGGATACAAGCCACTGATCTTTCCGAAGAATAAACTGTACGAGCACTGTGCATACACGTATCCTGTTGAGATCGCCAA

Full Affymetrix probeset data:

Annotations for 1623463_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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