FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623520_a_at:

>probe:Drosophila_2:1623520_a_at:247:75; Interrogation_Position=1034; Antisense; AGGAGCGACTTAAGGCCAAGCAGCA
>probe:Drosophila_2:1623520_a_at:94:657; Interrogation_Position=1169; Antisense; TAATGCGCGGTACTTAATATCTAAA
>probe:Drosophila_2:1623520_a_at:137:461; Interrogation_Position=1196; Antisense; GATTTTTCTGTACTTCGATCTTTGA
>probe:Drosophila_2:1623520_a_at:449:201; Interrogation_Position=677; Antisense; AACCCTTTGATGAGTTCGACGCCCT
>probe:Drosophila_2:1623520_a_at:108:637; Interrogation_Position=692; Antisense; TCGACGCCCTGCTAGGTGAACAGAT
>probe:Drosophila_2:1623520_a_at:53:387; Interrogation_Position=709; Antisense; GAACAGATTGCCATGTCCAGGCTGG
>probe:Drosophila_2:1623520_a_at:620:669; Interrogation_Position=765; Antisense; TACTGCTTCCAGTAACAGCACGCTG
>probe:Drosophila_2:1623520_a_at:114:13; Interrogation_Position=801; Antisense; ATTCTCCCGCGGCAATGCTGTAATG
>probe:Drosophila_2:1623520_a_at:356:233; Interrogation_Position=814; Antisense; AATGCTGTAATGTCCACGCCGTACT
>probe:Drosophila_2:1623520_a_at:379:629; Interrogation_Position=838; Antisense; TCCGGTGTAAATGCGACCTTCGACA
>probe:Drosophila_2:1623520_a_at:697:301; Interrogation_Position=883; Antisense; CCGGCCTTCGATCGGAATGGAGCTC
>probe:Drosophila_2:1623520_a_at:366:229; Interrogation_Position=898; Antisense; AATGGAGCTCCGTTGGCATCGATGG
>probe:Drosophila_2:1623520_a_at:330:557; Interrogation_Position=921; Antisense; GGACATCAGCGACTATGGTCAGCCG
>probe:Drosophila_2:1623520_a_at:17:135; Interrogation_Position=967; Antisense; ACGCCGGCGGCTAAGAAATTATCCA

Paste this into a BLAST search page for me
AGGAGCGACTTAAGGCCAAGCAGCATAATGCGCGGTACTTAATATCTAAAGATTTTTCTGTACTTCGATCTTTGAAACCCTTTGATGAGTTCGACGCCCTTCGACGCCCTGCTAGGTGAACAGATGAACAGATTGCCATGTCCAGGCTGGTACTGCTTCCAGTAACAGCACGCTGATTCTCCCGCGGCAATGCTGTAATGAATGCTGTAATGTCCACGCCGTACTTCCGGTGTAAATGCGACCTTCGACACCGGCCTTCGATCGGAATGGAGCTCAATGGAGCTCCGTTGGCATCGATGGGGACATCAGCGACTATGGTCAGCCGACGCCGGCGGCTAAGAAATTATCCA

Full Affymetrix probeset data:

Annotations for 1623520_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720