FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623536_s_at:

>probe:Drosophila_2:1623536_s_at:142:199; Interrogation_Position=1485; Antisense; AACGCTCGCTTCGATAGCCATGCGG
>probe:Drosophila_2:1623536_s_at:74:127; Interrogation_Position=1500; Antisense; AGCCATGCGGCCGTACAGTTGAAGC
>probe:Drosophila_2:1623536_s_at:625:723; Interrogation_Position=1518; Antisense; TTGAAGCAGCAGACGCTGGCTCGTC
>probe:Drosophila_2:1623536_s_at:167:135; Interrogation_Position=1530; Antisense; ACGCTGGCTCGTCAGAGTCAGAAGA
>probe:Drosophila_2:1623536_s_at:332:421; Interrogation_Position=1569; Antisense; GAGCACCAGCAGCTCTGCCGCAGTG
>probe:Drosophila_2:1623536_s_at:369:523; Interrogation_Position=1603; Antisense; GGGCCAACAAGGTGCGCGACTTCCA
>probe:Drosophila_2:1623536_s_at:602:319; Interrogation_Position=1648; Antisense; GCCGCTCGGAGATGCAGCACTGCAA
>probe:Drosophila_2:1623536_s_at:438:359; Interrogation_Position=1669; Antisense; GCAAGCTGGTCAGCGGCGCCAACAA
>probe:Drosophila_2:1623536_s_at:420:111; Interrogation_Position=1701; Antisense; AGCAAGTGCTGCTACTAGGCGGCCA
>probe:Drosophila_2:1623536_s_at:49:51; Interrogation_Position=1769; Antisense; ATGCCTCCAGCGCTCGAGGAGCCGA
>probe:Drosophila_2:1623536_s_at:496:141; Interrogation_Position=1793; Antisense; ACGGAGCCGTAGGAGGAGCATTACA
>probe:Drosophila_2:1623536_s_at:641:417; Interrogation_Position=1808; Antisense; GAGCATTACAATCATGGCAGGCGAC
>probe:Drosophila_2:1623536_s_at:590:347; Interrogation_Position=1824; Antisense; GCAGGCGACGCGATTTTAATTAGTA
>probe:Drosophila_2:1623536_s_at:14:239; Interrogation_Position=1920; Antisense; AATCTAGCAGCTACAAGAAACGCAT

Paste this into a BLAST search page for me
AACGCTCGCTTCGATAGCCATGCGGAGCCATGCGGCCGTACAGTTGAAGCTTGAAGCAGCAGACGCTGGCTCGTCACGCTGGCTCGTCAGAGTCAGAAGAGAGCACCAGCAGCTCTGCCGCAGTGGGGCCAACAAGGTGCGCGACTTCCAGCCGCTCGGAGATGCAGCACTGCAAGCAAGCTGGTCAGCGGCGCCAACAAAGCAAGTGCTGCTACTAGGCGGCCAATGCCTCCAGCGCTCGAGGAGCCGAACGGAGCCGTAGGAGGAGCATTACAGAGCATTACAATCATGGCAGGCGACGCAGGCGACGCGATTTTAATTAGTAAATCTAGCAGCTACAAGAAACGCAT

Full Affymetrix probeset data:

Annotations for 1623536_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720