FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623553_a_at:

>probe:Drosophila_2:1623553_a_at:468:129; Interrogation_Position=2286; Antisense; ACCATGCTGGGATTTATAGTGCTGA
>probe:Drosophila_2:1623553_a_at:713:175; Interrogation_Position=2311; Antisense; AAACGATAAGTGCTGCCGGAGCCCA
>probe:Drosophila_2:1623553_a_at:685:523; Interrogation_Position=2370; Antisense; GGGCTTAACACACGATTACCACGGA
>probe:Drosophila_2:1623553_a_at:77:55; Interrogation_Position=2490; Antisense; ATGAACGGACACATGCCGATGCTCT
>probe:Drosophila_2:1623553_a_at:304:447; Interrogation_Position=2507; Antisense; GATGCTCTCATTCCTGACTTGTAAA
>probe:Drosophila_2:1623553_a_at:189:115; Interrogation_Position=2568; Antisense; AGCAGTGGCCAGTCGAGCACATTGT
>probe:Drosophila_2:1623553_a_at:444:3; Interrogation_Position=2588; Antisense; ATTGTGTACGCTGCATTTCTAATCG
>probe:Drosophila_2:1623553_a_at:704:199; Interrogation_Position=2629; Antisense; AACCATGTTCTCTCTGATAAGTCAA
>probe:Drosophila_2:1623553_a_at:261:341; Interrogation_Position=2658; Antisense; GCTATTGTTACCAGCATATTCGAGT
>probe:Drosophila_2:1623553_a_at:472:389; Interrogation_Position=2686; Antisense; GAAACAACCAATATCGTGCATAGCT
>probe:Drosophila_2:1623553_a_at:571:59; Interrogation_Position=2720; Antisense; ATGTACACGTACTGCGTTCTATATA
>probe:Drosophila_2:1623553_a_at:657:401; Interrogation_Position=2758; Antisense; GACATCTAGAGAATCACCGGGTTCG
>probe:Drosophila_2:1623553_a_at:382:43; Interrogation_Position=2773; Antisense; ACCGGGTTCGGTGATATCGCACTTT
>probe:Drosophila_2:1623553_a_at:354:493; Interrogation_Position=2798; Antisense; TGTAAATACGCGCAAATCCCCTAGT

Paste this into a BLAST search page for me
ACCATGCTGGGATTTATAGTGCTGAAAACGATAAGTGCTGCCGGAGCCCAGGGCTTAACACACGATTACCACGGAATGAACGGACACATGCCGATGCTCTGATGCTCTCATTCCTGACTTGTAAAAGCAGTGGCCAGTCGAGCACATTGTATTGTGTACGCTGCATTTCTAATCGAACCATGTTCTCTCTGATAAGTCAAGCTATTGTTACCAGCATATTCGAGTGAAACAACCAATATCGTGCATAGCTATGTACACGTACTGCGTTCTATATAGACATCTAGAGAATCACCGGGTTCGACCGGGTTCGGTGATATCGCACTTTTGTAAATACGCGCAAATCCCCTAGT

Full Affymetrix probeset data:

Annotations for 1623553_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720