FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623645_a_at:

>probe:Drosophila_2:1623645_a_at:203:67; Interrogation_Position=1320; Antisense; AGGCGTATCCCAGCTTTATGGCAGC
>probe:Drosophila_2:1623645_a_at:433:705; Interrogation_Position=1335; Antisense; TTATGGCAGCAGGACGCACCGGCAA
>probe:Drosophila_2:1623645_a_at:207:121; Interrogation_Position=1421; Antisense; AGCTGTCTGCAGTACATGCTGGAGC
>probe:Drosophila_2:1623645_a_at:469:445; Interrogation_Position=1455; Antisense; GATGAACGAGCACAATCTGGCCACC
>probe:Drosophila_2:1623645_a_at:573:237; Interrogation_Position=1468; Antisense; AATCTGGCCACCGTATTTGCGCCGA
>probe:Drosophila_2:1623645_a_at:722:111; Interrogation_Position=1511; Antisense; AGCACATGACCAACCTGACGGAGGA
>probe:Drosophila_2:1623645_a_at:115:77; Interrogation_Position=1532; Antisense; AGGAGATCTTTATGCTCTCCTCGCT
>probe:Drosophila_2:1623645_a_at:191:647; Interrogation_Position=1556; Antisense; TCATCACCCACTGCAAGACTATATT
>probe:Drosophila_2:1623645_a_at:446:21; Interrogation_Position=1576; Antisense; ATATTCGCCACATCCTGAGGACGAG
>probe:Drosophila_2:1623645_a_at:456:555; Interrogation_Position=1594; Antisense; GGACGAGGTCATCATACCATGCTGC
>probe:Drosophila_2:1623645_a_at:389:281; Interrogation_Position=1615; Antisense; CTGCCCATACCAAGCCAATAACTAA
>probe:Drosophila_2:1623645_a_at:297:75; Interrogation_Position=1656; Antisense; AGGAGCACGGCCAAGCGAATCGCGT
>probe:Drosophila_2:1623645_a_at:462:131; Interrogation_Position=1689; Antisense; ACCTGTCTCTTTCGAAGCGAATCCT
>probe:Drosophila_2:1623645_a_at:64:373; Interrogation_Position=1702; Antisense; GAAGCGAATCCTTAACTTCCACCAA

Paste this into a BLAST search page for me
AGGCGTATCCCAGCTTTATGGCAGCTTATGGCAGCAGGACGCACCGGCAAAGCTGTCTGCAGTACATGCTGGAGCGATGAACGAGCACAATCTGGCCACCAATCTGGCCACCGTATTTGCGCCGAAGCACATGACCAACCTGACGGAGGAAGGAGATCTTTATGCTCTCCTCGCTTCATCACCCACTGCAAGACTATATTATATTCGCCACATCCTGAGGACGAGGGACGAGGTCATCATACCATGCTGCCTGCCCATACCAAGCCAATAACTAAAGGAGCACGGCCAAGCGAATCGCGTACCTGTCTCTTTCGAAGCGAATCCTGAAGCGAATCCTTAACTTCCACCAA

Full Affymetrix probeset data:

Annotations for 1623645_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720