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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623669_at:

>probe:Drosophila_2:1623669_at:354:233; Interrogation_Position=112; Antisense; AATGCATTGACTGCAATAAGCCTGA
>probe:Drosophila_2:1623669_at:729:31; Interrogation_Position=127; Antisense; ATAAGCCTGATAATGATCCGGGAAT
>probe:Drosophila_2:1623669_at:648:447; Interrogation_Position=141; Antisense; GATCCGGGAATTATAATTCCTCCAG
>probe:Drosophila_2:1623669_at:271:247; Interrogation_Position=155; Antisense; AATTCCTCCAGACCATAAATCAGCT
>probe:Drosophila_2:1623669_at:289:165; Interrogation_Position=171; Antisense; AAATCAGCTGGATCCATGTCTTACA
>probe:Drosophila_2:1623669_at:589:61; Interrogation_Position=186; Antisense; ATGTCTTACACACTCACATCTGGAG
>probe:Drosophila_2:1623669_at:222:613; Interrogation_Position=19; Antisense; TGAAAGCTCTTCAAGTCGCCGGAAC
>probe:Drosophila_2:1623669_at:341:709; Interrogation_Position=191; Antisense; TTACACACTCACATCTGGAGCCATC
>probe:Drosophila_2:1623669_at:370:315; Interrogation_Position=210; Antisense; GCCATCTTCTTTGGAATTATATATC
>probe:Drosophila_2:1623669_at:352:635; Interrogation_Position=34; Antisense; TCGCCGGAACTTTGATGCTGCTTTT
>probe:Drosophila_2:1623669_at:583:191; Interrogation_Position=41; Antisense; AACTTTGATGCTGCTTTTCTGCCTG
>probe:Drosophila_2:1623669_at:188:697; Interrogation_Position=56; Antisense; TTTCTGCCTGCTGGCAGCTGTTAAT
>probe:Drosophila_2:1623669_at:97:121; Interrogation_Position=71; Antisense; AGCTGTTAATGCTACGCCGGGACAA
>probe:Drosophila_2:1623669_at:269:673; Interrogation_Position=83; Antisense; TACGCCGGGACAAGTGTATATCAAT

Paste this into a BLAST search page for me
AATGCATTGACTGCAATAAGCCTGAATAAGCCTGATAATGATCCGGGAATGATCCGGGAATTATAATTCCTCCAGAATTCCTCCAGACCATAAATCAGCTAAATCAGCTGGATCCATGTCTTACAATGTCTTACACACTCACATCTGGAGTGAAAGCTCTTCAAGTCGCCGGAACTTACACACTCACATCTGGAGCCATCGCCATCTTCTTTGGAATTATATATCTCGCCGGAACTTTGATGCTGCTTTTAACTTTGATGCTGCTTTTCTGCCTGTTTCTGCCTGCTGGCAGCTGTTAATAGCTGTTAATGCTACGCCGGGACAATACGCCGGGACAAGTGTATATCAAT

Full Affymetrix probeset data:

Annotations for 1623669_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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