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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623682_a_at:

>probe:Drosophila_2:1623682_a_at:390:187; Interrogation_Position=1043; Antisense; AACAACAACCAAGCAGCATACTTAA
>probe:Drosophila_2:1623682_a_at:595:345; Interrogation_Position=1058; Antisense; GCATACTTAATGAAGTCACCGTTTA
>probe:Drosophila_2:1623682_a_at:609:351; Interrogation_Position=1121; Antisense; GCAGCAACAAACAAGAGTCGCATGT
>probe:Drosophila_2:1623682_a_at:67:431; Interrogation_Position=1135; Antisense; GAGTCGCATGTTATCGTTTCGAGCA
>probe:Drosophila_2:1623682_a_at:691:475; Interrogation_Position=1144; Antisense; GTTATCGTTTCGAGCAACAAGAACA
>probe:Drosophila_2:1623682_a_at:532:381; Interrogation_Position=1164; Antisense; GAACAACAAGTCTATCACTACACTT
>probe:Drosophila_2:1623682_a_at:479:261; Interrogation_Position=1248; Antisense; CAGCATCCACCAGTATTGCCGAAAG
>probe:Drosophila_2:1623682_a_at:380:91; Interrogation_Position=1259; Antisense; AGTATTGCCGAAAGATGGCGCCCAT
>probe:Drosophila_2:1623682_a_at:233:171; Interrogation_Position=1269; Antisense; AAAGATGGCGCCCATGGCGCACTAA
>probe:Drosophila_2:1623682_a_at:251:67; Interrogation_Position=1282; Antisense; ATGGCGCACTAAGGTCAGCGCGCCA
>probe:Drosophila_2:1623682_a_at:85:355; Interrogation_Position=1324; Antisense; GCACCGGCTGCATTTTGTTTGACAG
>probe:Drosophila_2:1623682_a_at:568:479; Interrogation_Position=1340; Antisense; GTTTGACAGTTTTCCACTAAGAAGT
>probe:Drosophila_2:1623682_a_at:427:185; Interrogation_Position=1433; Antisense; AAAATTGTCGATTTCGTTGCGAGAA
>probe:Drosophila_2:1623682_a_at:644:177; Interrogation_Position=987; Antisense; AAACTGAGCGAGATGTTGAACGAGA

Paste this into a BLAST search page for me
AACAACAACCAAGCAGCATACTTAAGCATACTTAATGAAGTCACCGTTTAGCAGCAACAAACAAGAGTCGCATGTGAGTCGCATGTTATCGTTTCGAGCAGTTATCGTTTCGAGCAACAAGAACAGAACAACAAGTCTATCACTACACTTCAGCATCCACCAGTATTGCCGAAAGAGTATTGCCGAAAGATGGCGCCCATAAAGATGGCGCCCATGGCGCACTAAATGGCGCACTAAGGTCAGCGCGCCAGCACCGGCTGCATTTTGTTTGACAGGTTTGACAGTTTTCCACTAAGAAGTAAAATTGTCGATTTCGTTGCGAGAAAAACTGAGCGAGATGTTGAACGAGA

Full Affymetrix probeset data:

Annotations for 1623682_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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