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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623693_a_at:

>probe:Drosophila_2:1623693_a_at:189:341; Interrogation_Position=2916; Antisense; GCTACTAATCCTCATCCTAGTGGAG
>probe:Drosophila_2:1623693_a_at:573:445; Interrogation_Position=2941; Antisense; GATGCAGTTGGTCCAGACACTCTGT
>probe:Drosophila_2:1623693_a_at:328:475; Interrogation_Position=2964; Antisense; GTTATTTGTTTTATCCATCCTCGTA
>probe:Drosophila_2:1623693_a_at:582:489; Interrogation_Position=2986; Antisense; GTACTTGTCTTTGTCCCATTTAGCA
>probe:Drosophila_2:1623693_a_at:583:363; Interrogation_Position=3173; Antisense; GAATTGCTTCTTGTTTCCATTGCTA
>probe:Drosophila_2:1623693_a_at:419:239; Interrogation_Position=3197; Antisense; AATCATCTGCTTTTCGTGTGCTAAT
>probe:Drosophila_2:1623693_a_at:545:677; Interrogation_Position=3231; Antisense; TAGTACGTGCGATATCGGCCGTGCA
>probe:Drosophila_2:1623693_a_at:140:457; Interrogation_Position=3256; Antisense; GATAGATTGCTCAGCTCGCGAGTCA
>probe:Drosophila_2:1623693_a_at:675:429; Interrogation_Position=3275; Antisense; GAGTCAAGCCTCTTTTGGTTGCACC
>probe:Drosophila_2:1623693_a_at:8:355; Interrogation_Position=3295; Antisense; GCACCCACGGCAGACATTTGTACAT
>probe:Drosophila_2:1623693_a_at:597:143; Interrogation_Position=3322; Antisense; ACTGTCTGATTGTAAGCCTCGTGTA
>probe:Drosophila_2:1623693_a_at:632:203; Interrogation_Position=3335; Antisense; AAGCCTCGTGTAATACCTCCATTAA
>probe:Drosophila_2:1623693_a_at:703:55; Interrogation_Position=3399; Antisense; ATGACTCAATTCACTGCTCACATGT
>probe:Drosophila_2:1623693_a_at:480:625; Interrogation_Position=3427; Antisense; TGCCCATGCCTTAACGTGTCAAACA

Paste this into a BLAST search page for me
GCTACTAATCCTCATCCTAGTGGAGGATGCAGTTGGTCCAGACACTCTGTGTTATTTGTTTTATCCATCCTCGTAGTACTTGTCTTTGTCCCATTTAGCAGAATTGCTTCTTGTTTCCATTGCTAAATCATCTGCTTTTCGTGTGCTAATTAGTACGTGCGATATCGGCCGTGCAGATAGATTGCTCAGCTCGCGAGTCAGAGTCAAGCCTCTTTTGGTTGCACCGCACCCACGGCAGACATTTGTACATACTGTCTGATTGTAAGCCTCGTGTAAAGCCTCGTGTAATACCTCCATTAAATGACTCAATTCACTGCTCACATGTTGCCCATGCCTTAACGTGTCAAACA

Full Affymetrix probeset data:

Annotations for 1623693_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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