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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623776_s_at:

>probe:Drosophila_2:1623776_s_at:275:273; Interrogation_Position=3044; Antisense; CATTTCAACACGTTCGCATCACAAA
>probe:Drosophila_2:1623776_s_at:629:345; Interrogation_Position=3059; Antisense; GCATCACAAATCTGCGCATCGGTTG
>probe:Drosophila_2:1623776_s_at:518:641; Interrogation_Position=3069; Antisense; TCTGCGCATCGGTTGTATAGCTTTA
>probe:Drosophila_2:1623776_s_at:67:479; Interrogation_Position=3125; Antisense; GTTTATTGGGCTAATCACAGTCTAA
>probe:Drosophila_2:1623776_s_at:251:173; Interrogation_Position=3152; Antisense; AAAGCCATTGAAAGCGCCTCACTTC
>probe:Drosophila_2:1623776_s_at:201:317; Interrogation_Position=3167; Antisense; GCCTCACTTCAGTCATTTATGCTTT
>probe:Drosophila_2:1623776_s_at:409:479; Interrogation_Position=3236; Antisense; GTTTCTTTCGTAAGCAGCACTAAAT
>probe:Drosophila_2:1623776_s_at:636:145; Interrogation_Position=3288; Antisense; ACTAGGATATACACACTCATTCGAA
>probe:Drosophila_2:1623776_s_at:53:571; Interrogation_Position=3315; Antisense; GGCATACAAGCCAATCTCAAATTTC
>probe:Drosophila_2:1623776_s_at:136:257; Interrogation_Position=3332; Antisense; CAAATTTCTTCTTTGCGTGTGAATT
>probe:Drosophila_2:1623776_s_at:94:73; Interrogation_Position=3369; Antisense; AGGCAATTGCATAGTAACCCTTGAA
>probe:Drosophila_2:1623776_s_at:670:473; Interrogation_Position=3470; Antisense; GTTAGTGTTTCATCGATGTCTTGCG
>probe:Drosophila_2:1623776_s_at:561:441; Interrogation_Position=3484; Antisense; GATGTCTTGCGAAACTCTAATTGTA
>probe:Drosophila_2:1623776_s_at:141:613; Interrogation_Position=3563; Antisense; TAAGTAAGATTTAGCCCAACGGAAT

Paste this into a BLAST search page for me
CATTTCAACACGTTCGCATCACAAAGCATCACAAATCTGCGCATCGGTTGTCTGCGCATCGGTTGTATAGCTTTAGTTTATTGGGCTAATCACAGTCTAAAAAGCCATTGAAAGCGCCTCACTTCGCCTCACTTCAGTCATTTATGCTTTGTTTCTTTCGTAAGCAGCACTAAATACTAGGATATACACACTCATTCGAAGGCATACAAGCCAATCTCAAATTTCCAAATTTCTTCTTTGCGTGTGAATTAGGCAATTGCATAGTAACCCTTGAAGTTAGTGTTTCATCGATGTCTTGCGGATGTCTTGCGAAACTCTAATTGTATAAGTAAGATTTAGCCCAACGGAAT

Full Affymetrix probeset data:

Annotations for 1623776_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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