FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623809_s_at:

>probe:Drosophila_2:1623809_s_at:561:613; Interrogation_Position=1058; Antisense; TGAAGTGAAGGCCTGGACCATCCAG
>probe:Drosophila_2:1623809_s_at:222:411; Interrogation_Position=1111; Antisense; GACGCATTCACACCGACTTCGAGAA
>probe:Drosophila_2:1623809_s_at:539:81; Interrogation_Position=1135; Antisense; AGGGCTTCATTATGGCCGAGGTGAT
>probe:Drosophila_2:1623809_s_at:718:445; Interrogation_Position=1157; Antisense; GATGCACTTCGAGGACTTCAAGGCG
>probe:Drosophila_2:1623809_s_at:702:525; Interrogation_Position=1229; Antisense; GGGACGCAACTACACCGTCGAGGAT
>probe:Drosophila_2:1623809_s_at:64:689; Interrogation_Position=1264; Antisense; TATTCTTTAAGTTCAACGCCGGCGC
>probe:Drosophila_2:1623809_s_at:662:393; Interrogation_Position=1310; Antisense; GAAATGATACCGTTTGGCCATGATC
>probe:Drosophila_2:1623809_s_at:557:313; Interrogation_Position=1338; Antisense; GCCATGTCCACCGTTTTGTACATTA
>probe:Drosophila_2:1623809_s_at:607:661; Interrogation_Position=1361; Antisense; TAACTTGATCTTGTACTCCCAGATG
>probe:Drosophila_2:1623809_s_at:465:99; Interrogation_Position=1381; Antisense; AGATGTTTCGCTTCGCCAGAGGCTA
>probe:Drosophila_2:1623809_s_at:640:99; Interrogation_Position=1398; Antisense; AGAGGCTAGCTCCTCATTATCACAT
>probe:Drosophila_2:1623809_s_at:303:651; Interrogation_Position=1426; Antisense; TCACTCTCATGTTCGAGGCCTGAAA
>probe:Drosophila_2:1623809_s_at:1:383; Interrogation_Position=942; Antisense; GAACTGGAGCGCAAGGCCTACGAGA
>probe:Drosophila_2:1623809_s_at:187:423; Interrogation_Position=993; Antisense; GAGAAGATCGTTGTGACCGGCTACA

Paste this into a BLAST search page for me
TGAAGTGAAGGCCTGGACCATCCAGGACGCATTCACACCGACTTCGAGAAAGGGCTTCATTATGGCCGAGGTGATGATGCACTTCGAGGACTTCAAGGCGGGGACGCAACTACACCGTCGAGGATTATTCTTTAAGTTCAACGCCGGCGCGAAATGATACCGTTTGGCCATGATCGCCATGTCCACCGTTTTGTACATTATAACTTGATCTTGTACTCCCAGATGAGATGTTTCGCTTCGCCAGAGGCTAAGAGGCTAGCTCCTCATTATCACATTCACTCTCATGTTCGAGGCCTGAAAGAACTGGAGCGCAAGGCCTACGAGAGAGAAGATCGTTGTGACCGGCTACA

Full Affymetrix probeset data:

Annotations for 1623809_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720