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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623810_at:

>probe:Drosophila_2:1623810_at:117:439; Interrogation_Position=1861; Antisense; GAGGCAACCTATGGCGGGCTAACGC
>probe:Drosophila_2:1623810_at:654:289; Interrogation_Position=1875; Antisense; CGGGCTAACGCCTAAACTCTAATGT
>probe:Drosophila_2:1623810_at:595:473; Interrogation_Position=1947; Antisense; GTTCAAACCACAACCTAAGCTTAAG
>probe:Drosophila_2:1623810_at:494:205; Interrogation_Position=1963; Antisense; AAGCTTAAGCTACCGCTAAAGGCGA
>probe:Drosophila_2:1623810_at:639:593; Interrogation_Position=2008; Antisense; TGGGATGCTCCAGCAACTGATTCAT
>probe:Drosophila_2:1623810_at:425:421; Interrogation_Position=2064; Antisense; GAGCACAACTGTTACTCACTTTCAG
>probe:Drosophila_2:1623810_at:512:475; Interrogation_Position=2074; Antisense; GTTACTCACTTTCAGATAGCAGACT
>probe:Drosophila_2:1623810_at:280:343; Interrogation_Position=2127; Antisense; GCTTAGATTCAAATTCCAGCCTTAA
>probe:Drosophila_2:1623810_at:622:313; Interrogation_Position=2145; Antisense; GCCTTAACTGGACTTAAAGCTGGAC
>probe:Drosophila_2:1623810_at:682:471; Interrogation_Position=2196; Antisense; GTTCAGGGCGATGACTTCGCAGAAT
>probe:Drosophila_2:1623810_at:584:495; Interrogation_Position=2242; Antisense; GTCTATTTACGATTTGGAGCAACTT
>probe:Drosophila_2:1623810_at:702:551; Interrogation_Position=2257; Antisense; GGAGCAACTTTCTTGTGGTCACTCT
>probe:Drosophila_2:1623810_at:488:705; Interrogation_Position=2288; Antisense; TTAGTTTCTAACTCTGCTGATCAGT
>probe:Drosophila_2:1623810_at:593:439; Interrogation_Position=2314; Antisense; GATGGAGTATGCTCACAATTACTTT

Paste this into a BLAST search page for me
GAGGCAACCTATGGCGGGCTAACGCCGGGCTAACGCCTAAACTCTAATGTGTTCAAACCACAACCTAAGCTTAAGAAGCTTAAGCTACCGCTAAAGGCGATGGGATGCTCCAGCAACTGATTCATGAGCACAACTGTTACTCACTTTCAGGTTACTCACTTTCAGATAGCAGACTGCTTAGATTCAAATTCCAGCCTTAAGCCTTAACTGGACTTAAAGCTGGACGTTCAGGGCGATGACTTCGCAGAATGTCTATTTACGATTTGGAGCAACTTGGAGCAACTTTCTTGTGGTCACTCTTTAGTTTCTAACTCTGCTGATCAGTGATGGAGTATGCTCACAATTACTTT

Full Affymetrix probeset data:

Annotations for 1623810_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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