FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623838_s_at:

>probe:Drosophila_2:1623838_s_at:205:399; Interrogation_Position=2604; Antisense; GACAGTTGGATACTCTGATCTGCAA
>probe:Drosophila_2:1623838_s_at:631:91; Interrogation_Position=2634; Antisense; AGTTTGCCTTTCTGCGGGAATCAGC
>probe:Drosophila_2:1623838_s_at:121:171; Interrogation_Position=2669; Antisense; AAAGGTCAAGCCCAATTAGTGTCAA
>probe:Drosophila_2:1623838_s_at:329:15; Interrogation_Position=2683; Antisense; ATTAGTGTCAATTCGCCAGCTGCGT
>probe:Drosophila_2:1623838_s_at:140:709; Interrogation_Position=2724; Antisense; TTAACGTAGATTCCTGCATCCTCAT
>probe:Drosophila_2:1623838_s_at:548:45; Interrogation_Position=2741; Antisense; ATCCTCATCCTGGTTACTCATTCGA
>probe:Drosophila_2:1623838_s_at:9:393; Interrogation_Position=2766; Antisense; GAAAGTTCCTTGGTTCGTGTAGCTT
>probe:Drosophila_2:1623838_s_at:53:471; Interrogation_Position=2778; Antisense; GTTCGTGTAGCTTGAGTTTGTCCAG
>probe:Drosophila_2:1623838_s_at:276:481; Interrogation_Position=2793; Antisense; GTTTGTCCAGCCGTTGAGTCCAGAG
>probe:Drosophila_2:1623838_s_at:531:467; Interrogation_Position=2903; Antisense; GTTGTTGGTCCATTTTTGAGCATAT
>probe:Drosophila_2:1623838_s_at:336:453; Interrogation_Position=3006; Antisense; GATCTCATCGAGTCTTCAATGTACA
>probe:Drosophila_2:1623838_s_at:347:485; Interrogation_Position=3069; Antisense; GTATGTGTCCGTAAGTGTCGCTCTG
>probe:Drosophila_2:1623838_s_at:136:701; Interrogation_Position=3104; Antisense; TTTTGCCAAATTGTCTCCCGTGGAG
>probe:Drosophila_2:1623838_s_at:471:633; Interrogation_Position=3119; Antisense; TCCCGTGGAGTCAATCGCGTACAAT

Paste this into a BLAST search page for me
GACAGTTGGATACTCTGATCTGCAAAGTTTGCCTTTCTGCGGGAATCAGCAAAGGTCAAGCCCAATTAGTGTCAAATTAGTGTCAATTCGCCAGCTGCGTTTAACGTAGATTCCTGCATCCTCATATCCTCATCCTGGTTACTCATTCGAGAAAGTTCCTTGGTTCGTGTAGCTTGTTCGTGTAGCTTGAGTTTGTCCAGGTTTGTCCAGCCGTTGAGTCCAGAGGTTGTTGGTCCATTTTTGAGCATATGATCTCATCGAGTCTTCAATGTACAGTATGTGTCCGTAAGTGTCGCTCTGTTTTGCCAAATTGTCTCCCGTGGAGTCCCGTGGAGTCAATCGCGTACAAT

Full Affymetrix probeset data:

Annotations for 1623838_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720