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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623863_a_at:

>probe:Drosophila_2:1623863_a_at:259:27; Interrogation_Position=1571; Antisense; ATAGCGTTGGCAGCAAGCAGCTCCT
>probe:Drosophila_2:1623863_a_at:441:109; Interrogation_Position=1598; Antisense; AGAAGAGCGTCAGCACACCGATGCA
>probe:Drosophila_2:1623863_a_at:327:615; Interrogation_Position=1619; Antisense; TGCAGCAGGAGGATACGCCCAGGTT
>probe:Drosophila_2:1623863_a_at:504:199; Interrogation_Position=1654; Antisense; AACCGTCTCAGCTCCGGTGTGGAGG
>probe:Drosophila_2:1623863_a_at:688:243; Interrogation_Position=1696; Antisense; AATTTGGGACTCTAAACGCGTGGCA
>probe:Drosophila_2:1623863_a_at:644:175; Interrogation_Position=1709; Antisense; AAACGCGTGGCAGTCTGCGAAACAA
>probe:Drosophila_2:1623863_a_at:395:615; Interrogation_Position=1737; Antisense; TGAATTGAAACACCATCCAGCATCC
>probe:Drosophila_2:1623863_a_at:220:171; Interrogation_Position=1851; Antisense; AAACTACTCTCGCAGTCCAATTTGA
>probe:Drosophila_2:1623863_a_at:381:71; Interrogation_Position=1891; Antisense; AGGCAAATGGATTTCCGGTGGCGTA
>probe:Drosophila_2:1623863_a_at:387:289; Interrogation_Position=1906; Antisense; CGGTGGCGTAACTTCGTTGCAGAAT
>probe:Drosophila_2:1623863_a_at:640:217; Interrogation_Position=1942; Antisense; AAGTATACGCCAAACACAGACACCC
>probe:Drosophila_2:1623863_a_at:78:147; Interrogation_Position=1962; Antisense; CACCCCTTAATTATGAACCGATCCT
>probe:Drosophila_2:1623863_a_at:699:245; Interrogation_Position=1994; Antisense; AATTCTCTCATTGCTGTGACAGTCA
>probe:Drosophila_2:1623863_a_at:52:363; Interrogation_Position=2059; Antisense; GAATTACGGACTACTACGGGACAAT

Paste this into a BLAST search page for me
ATAGCGTTGGCAGCAAGCAGCTCCTAGAAGAGCGTCAGCACACCGATGCATGCAGCAGGAGGATACGCCCAGGTTAACCGTCTCAGCTCCGGTGTGGAGGAATTTGGGACTCTAAACGCGTGGCAAAACGCGTGGCAGTCTGCGAAACAATGAATTGAAACACCATCCAGCATCCAAACTACTCTCGCAGTCCAATTTGAAGGCAAATGGATTTCCGGTGGCGTACGGTGGCGTAACTTCGTTGCAGAATAAGTATACGCCAAACACAGACACCCCACCCCTTAATTATGAACCGATCCTAATTCTCTCATTGCTGTGACAGTCAGAATTACGGACTACTACGGGACAAT

Full Affymetrix probeset data:

Annotations for 1623863_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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