FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623904_a_at:

>probe:Drosophila_2:1623904_a_at:78:249; Interrogation_Position=1047; Antisense; AATTGAGTTACCATTGCCGGATCGT
>probe:Drosophila_2:1623904_a_at:721:545; Interrogation_Position=1065; Antisense; GGATCGTCGCCAGAAGCGCTTAGTT
>probe:Drosophila_2:1623904_a_at:491:205; Interrogation_Position=1078; Antisense; AAGCGCTTAGTTTTCACCACAATCA
>probe:Drosophila_2:1623904_a_at:381:545; Interrogation_Position=1131; Antisense; GGATCTGGAGGACATCATTGCACGT
>probe:Drosophila_2:1623904_a_at:208:723; Interrogation_Position=1148; Antisense; TTGCACGTCCGGACAAGATCTCCAA
>probe:Drosophila_2:1623904_a_at:47:53; Interrogation_Position=1172; Antisense; ATGCGGATATCAATGCCATTTGCCA
>probe:Drosophila_2:1623904_a_at:178:299; Interrogation_Position=1219; Antisense; CGCGAGAATCGCTATGTGGTCAATG
>probe:Drosophila_2:1623904_a_at:625:81; Interrogation_Position=1259; Antisense; AGGGTTATAAGACCAGCGTGCGCAA
>probe:Drosophila_2:1623904_a_at:417:329; Interrogation_Position=1274; Antisense; GCGTGCGCAAGGACGAAGCTCAGCA
>probe:Drosophila_2:1623904_a_at:194:245; Interrogation_Position=1369; Antisense; CAATCCCGAGTTTACCAAAATCCTG
>probe:Drosophila_2:1623904_a_at:467:287; Interrogation_Position=1455; Antisense; CGGCTTGGCGCGCAATTCAAAATAA
>probe:Drosophila_2:1623904_a_at:95:67; Interrogation_Position=947; Antisense; ATGGCTTTGATGAGACCACCAACAT
>probe:Drosophila_2:1623904_a_at:419:69; Interrogation_Position=982; Antisense; ATGGCCACCAATCGTGCAGATACCT
>probe:Drosophila_2:1623904_a_at:201:95; Interrogation_Position=999; Antisense; AGATACCTTAGATCCGGCTCTGTTA

Paste this into a BLAST search page for me
AATTGAGTTACCATTGCCGGATCGTGGATCGTCGCCAGAAGCGCTTAGTTAAGCGCTTAGTTTTCACCACAATCAGGATCTGGAGGACATCATTGCACGTTTGCACGTCCGGACAAGATCTCCAAATGCGGATATCAATGCCATTTGCCACGCGAGAATCGCTATGTGGTCAATGAGGGTTATAAGACCAGCGTGCGCAAGCGTGCGCAAGGACGAAGCTCAGCACAATCCCGAGTTTACCAAAATCCTGCGGCTTGGCGCGCAATTCAAAATAAATGGCTTTGATGAGACCACCAACATATGGCCACCAATCGTGCAGATACCTAGATACCTTAGATCCGGCTCTGTTA

Full Affymetrix probeset data:

Annotations for 1623904_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720