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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623917_a_at:

>probe:Drosophila_2:1623917_a_at:538:85; Interrogation_Position=1852; Antisense; AGTCCACGCCGGGATTGACAGAAAC
>probe:Drosophila_2:1623917_a_at:97:401; Interrogation_Position=1868; Antisense; GACAGAAACACATCCTGGACGCAGT
>probe:Drosophila_2:1623917_a_at:316:281; Interrogation_Position=1900; Antisense; CTCCATTTTTGGGAGCCCAGCAGCA
>probe:Drosophila_2:1623917_a_at:688:485; Interrogation_Position=1938; Antisense; GTAGCATCCTCACTGTCGATGTCGA
>probe:Drosophila_2:1623917_a_at:313:501; Interrogation_Position=1958; Antisense; GTCGATCGACAAACAACTGCAGCAC
>probe:Drosophila_2:1623917_a_at:153:113; Interrogation_Position=1990; Antisense; AGCAGCTGACGCAGACGCAACTGTA
>probe:Drosophila_2:1623917_a_at:664:357; Interrogation_Position=2045; Antisense; GCAAAACGGCTTCAAGCAGCAGCAG
>probe:Drosophila_2:1623917_a_at:375:357; Interrogation_Position=2096; Antisense; GCAACAGTCCCACACAATAAACGCA
>probe:Drosophila_2:1623917_a_at:668:567; Interrogation_Position=2142; Antisense; GGCAGCGGCAGTAGCGGTCTCACCA
>probe:Drosophila_2:1623917_a_at:700:121; Interrogation_Position=2154; Antisense; AGCGGTCTCACCATGAGGCACAATA
>probe:Drosophila_2:1623917_a_at:582:233; Interrogation_Position=2178; Antisense; AATGCCCTGGCCGTTAGTATCGAGA
>probe:Drosophila_2:1623917_a_at:285:413; Interrogation_Position=2201; Antisense; GACCGACGTTTGACTACTGGTGCAA
>probe:Drosophila_2:1623917_a_at:410:329; Interrogation_Position=2234; Antisense; GCGTGGTATAAATTTGGCCTTGACA
>probe:Drosophila_2:1623917_a_at:678:563; Interrogation_Position=2249; Antisense; GGCCTTGACAGGAGTTACGTTGGAT

Paste this into a BLAST search page for me
AGTCCACGCCGGGATTGACAGAAACGACAGAAACACATCCTGGACGCAGTCTCCATTTTTGGGAGCCCAGCAGCAGTAGCATCCTCACTGTCGATGTCGAGTCGATCGACAAACAACTGCAGCACAGCAGCTGACGCAGACGCAACTGTAGCAAAACGGCTTCAAGCAGCAGCAGGCAACAGTCCCACACAATAAACGCAGGCAGCGGCAGTAGCGGTCTCACCAAGCGGTCTCACCATGAGGCACAATAAATGCCCTGGCCGTTAGTATCGAGAGACCGACGTTTGACTACTGGTGCAAGCGTGGTATAAATTTGGCCTTGACAGGCCTTGACAGGAGTTACGTTGGAT

Full Affymetrix probeset data:

Annotations for 1623917_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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