FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623922_at:

>probe:Drosophila_2:1623922_at:213:227; Interrogation_Position=1632; Antisense; AAGGCAGCGCAAAATTTCACAAGAA
>probe:Drosophila_2:1623922_at:536:189; Interrogation_Position=1674; Antisense; AACTTTGCGTTTTAGGTCATCTAAT
>probe:Drosophila_2:1623922_at:408:393; Interrogation_Position=1805; Antisense; GAAATGAAATTCCTTGTGCAACTTT
>probe:Drosophila_2:1623922_at:654:511; Interrogation_Position=1863; Antisense; GTGTTTTTATTTCTCGTAGCATACT
>probe:Drosophila_2:1623922_at:131:487; Interrogation_Position=1878; Antisense; GTAGCATACTTTCAAGCGTCACCTT
>probe:Drosophila_2:1623922_at:495:129; Interrogation_Position=1898; Antisense; ACCTTAGGCGAGGTGCTGGTGTCTC
>probe:Drosophila_2:1623922_at:47:145; Interrogation_Position=1963; Antisense; ACTCACACTCATCATTAGCAGCTTC
>probe:Drosophila_2:1623922_at:38:675; Interrogation_Position=1978; Antisense; TAGCAGCTTCCGTCATTACAGTAAT
>probe:Drosophila_2:1623922_at:382:709; Interrogation_Position=1993; Antisense; TTACAGTAATGTTCCGTGCTATCTC
>probe:Drosophila_2:1623922_at:136:509; Interrogation_Position=2008; Antisense; GTGCTATCTCGACCAAACCTCATAT
>probe:Drosophila_2:1623922_at:586:37; Interrogation_Position=2038; Antisense; ATCTTGCCCATCTGCAGCTGTAATT
>probe:Drosophila_2:1623922_at:438:535; Interrogation_Position=2074; Antisense; GGTGCTTAACCATTGTAATTGTGCA
>probe:Drosophila_2:1623922_at:622:247; Interrogation_Position=2090; Antisense; AATTGTGCATTTCTTACCTCCAAAA
>probe:Drosophila_2:1623922_at:135:503; Interrogation_Position=2116; Antisense; GTCCTTGGATATAATCCCAACGCCC

Paste this into a BLAST search page for me
AAGGCAGCGCAAAATTTCACAAGAAAACTTTGCGTTTTAGGTCATCTAATGAAATGAAATTCCTTGTGCAACTTTGTGTTTTTATTTCTCGTAGCATACTGTAGCATACTTTCAAGCGTCACCTTACCTTAGGCGAGGTGCTGGTGTCTCACTCACACTCATCATTAGCAGCTTCTAGCAGCTTCCGTCATTACAGTAATTTACAGTAATGTTCCGTGCTATCTCGTGCTATCTCGACCAAACCTCATATATCTTGCCCATCTGCAGCTGTAATTGGTGCTTAACCATTGTAATTGTGCAAATTGTGCATTTCTTACCTCCAAAAGTCCTTGGATATAATCCCAACGCCC

Full Affymetrix probeset data:

Annotations for 1623922_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720