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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623949_s_at:

>probe:Drosophila_2:1623949_s_at:670:255; Interrogation_Position=1008; Antisense; CACGGTCGACCATCTGAGGGTTTTG
>probe:Drosophila_2:1623949_s_at:239:491; Interrogation_Position=1040; Antisense; GTACACGTATCCAGAGGAGCAGTTC
>probe:Drosophila_2:1623949_s_at:303:553; Interrogation_Position=1055; Antisense; GGAGCAGTTCGCTAATTTTCGCGAT
>probe:Drosophila_2:1623949_s_at:705:325; Interrogation_Position=1075; Antisense; GCGATTTTGCCGATATCAACACGCC
>probe:Drosophila_2:1623949_s_at:202:315; Interrogation_Position=1101; Antisense; GCCGATACGGCGTTTTCGCAATTTG
>probe:Drosophila_2:1623949_s_at:230:485; Interrogation_Position=1133; Antisense; GTATGCGGCCAAAAATGCCTCTGTA
>probe:Drosophila_2:1623949_s_at:382:281; Interrogation_Position=1163; Antisense; CTCTCATCCGCATCCTAAAAACATA
>probe:Drosophila_2:1623949_s_at:590:679; Interrogation_Position=799; Antisense; TATCGGAAACAACTCCTTTATCCTT
>probe:Drosophila_2:1623949_s_at:458:633; Interrogation_Position=830; Antisense; TCCGCTCTTGACAACTCAACAGCAA
>probe:Drosophila_2:1623949_s_at:180:111; Interrogation_Position=860; Antisense; AGCAACTCAGCAGCGGACTTTCGAT
>probe:Drosophila_2:1623949_s_at:396:329; Interrogation_Position=872; Antisense; GCGGACTTTCGATGCCAGTATACTT
>probe:Drosophila_2:1623949_s_at:663:431; Interrogation_Position=922; Antisense; GAGGTGGAACCTTCTATCCGGAGGA
>probe:Drosophila_2:1623949_s_at:285:547; Interrogation_Position=941; Antisense; GGAGGAGGAAATGCCCTATCACCCC
>probe:Drosophila_2:1623949_s_at:730:445; Interrogation_Position=993; Antisense; GATGCTAACAATGGACACGGTCGAC

Paste this into a BLAST search page for me
CACGGTCGACCATCTGAGGGTTTTGGTACACGTATCCAGAGGAGCAGTTCGGAGCAGTTCGCTAATTTTCGCGATGCGATTTTGCCGATATCAACACGCCGCCGATACGGCGTTTTCGCAATTTGGTATGCGGCCAAAAATGCCTCTGTACTCTCATCCGCATCCTAAAAACATATATCGGAAACAACTCCTTTATCCTTTCCGCTCTTGACAACTCAACAGCAAAGCAACTCAGCAGCGGACTTTCGATGCGGACTTTCGATGCCAGTATACTTGAGGTGGAACCTTCTATCCGGAGGAGGAGGAGGAAATGCCCTATCACCCCGATGCTAACAATGGACACGGTCGAC

Full Affymetrix probeset data:

Annotations for 1623949_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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