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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624001_at:

>probe:Drosophila_2:1624001_at:242:45; Interrogation_Position=111; Antisense; ATCGCCAACCATCAGCAGTGTCATC
>probe:Drosophila_2:1624001_at:427:573; Interrogation_Position=193; Antisense; GGCTGCACGTTCCTAGGCACTACTG
>probe:Drosophila_2:1624001_at:664:135; Interrogation_Position=199; Antisense; ACGTTCCTAGGCACTACTGGTAGTA
>probe:Drosophila_2:1624001_at:388:669; Interrogation_Position=213; Antisense; TACTGGTAGTACTTTGGGCCGCCCG
>probe:Drosophila_2:1624001_at:357:321; Interrogation_Position=250; Antisense; GCCCGATCGTTTGCGTCTGCATGGA
>probe:Drosophila_2:1624001_at:180:43; Interrogation_Position=255; Antisense; ATCGTTTGCGTCTGCATGGAGTCAA
>probe:Drosophila_2:1624001_at:322:479; Interrogation_Position=258; Antisense; GTTTGCGTCTGCATGGAGTCAATGA
>probe:Drosophila_2:1624001_at:63:439; Interrogation_Position=36; Antisense; GAGGCCCTGTGTCTCCCTGCGTCGT
>probe:Drosophila_2:1624001_at:497:301; Interrogation_Position=50; Antisense; CCCTGCGTCGTTGCCTGGATAAGAA
>probe:Drosophila_2:1624001_at:51:293; Interrogation_Position=55; Antisense; CGTCGTTGCCTGGATAAGAAGTCAA
>probe:Drosophila_2:1624001_at:594:657; Interrogation_Position=69; Antisense; TAAGAAGTCAACAGTTCGTCACATA
>probe:Drosophila_2:1624001_at:4:495; Interrogation_Position=75; Antisense; GTCAACAGTTCGTCACATAAGGCAG
>probe:Drosophila_2:1624001_at:708:93; Interrogation_Position=81; Antisense; AGTTCGTCACATAAGGCAGCGCCCG
>probe:Drosophila_2:1624001_at:88:495; Interrogation_Position=86; Antisense; GTCACATAAGGCAGCGCCCGAGCTC

Paste this into a BLAST search page for me
ATCGCCAACCATCAGCAGTGTCATCGGCTGCACGTTCCTAGGCACTACTGACGTTCCTAGGCACTACTGGTAGTATACTGGTAGTACTTTGGGCCGCCCGGCCCGATCGTTTGCGTCTGCATGGAATCGTTTGCGTCTGCATGGAGTCAAGTTTGCGTCTGCATGGAGTCAATGAGAGGCCCTGTGTCTCCCTGCGTCGTCCCTGCGTCGTTGCCTGGATAAGAACGTCGTTGCCTGGATAAGAAGTCAATAAGAAGTCAACAGTTCGTCACATAGTCAACAGTTCGTCACATAAGGCAGAGTTCGTCACATAAGGCAGCGCCCGGTCACATAAGGCAGCGCCCGAGCTC

Full Affymetrix probeset data:

Annotations for 1624001_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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