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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624010_a_at:

>probe:Drosophila_2:1624010_a_at:574:177; Interrogation_Position=1823; Antisense; AAACGGCGCCTCAGTGGGTGACCGA
>probe:Drosophila_2:1624010_a_at:588:373; Interrogation_Position=1860; Antisense; GAAGAACATTCCCAAGTTCCTCAAA
>probe:Drosophila_2:1624010_a_at:634:463; Interrogation_Position=1875; Antisense; GTTCCTCAAAATACCGTTCTTCCTG
>probe:Drosophila_2:1624010_a_at:87:171; Interrogation_Position=1914; Antisense; AATGACCAAGCCTGAACGAACGAAG
>probe:Drosophila_2:1624010_a_at:164:363; Interrogation_Position=1960; Antisense; GAATTTATTCAGTGTCGCAAGGTCT
>probe:Drosophila_2:1624010_a_at:595:505; Interrogation_Position=2005; Antisense; GTGCTGAATGCGGAAACTACCCCAA
>probe:Drosophila_2:1624010_a_at:24:243; Interrogation_Position=2076; Antisense; TAATTCGGAGGGATCCCAACTGCCA
>probe:Drosophila_2:1624010_a_at:183:193; Interrogation_Position=2093; Antisense; AACTGCCAGCTGAGGAACGAATTGA
>probe:Drosophila_2:1624010_a_at:398:597; Interrogation_Position=2125; Antisense; TGTAACGATGTGGTTGTGGACCCCA
>probe:Drosophila_2:1624010_a_at:98:725; Interrogation_Position=2138; Antisense; TTGTGGACCCCAACATGGACCTGCG
>probe:Drosophila_2:1624010_a_at:499:535; Interrogation_Position=2166; Antisense; GGTGCGCCACTTTATCTGGAAGCAG
>probe:Drosophila_2:1624010_a_at:579:501; Interrogation_Position=2190; Antisense; GTCGACCGATCTAACGTTTCAGTAC
>probe:Drosophila_2:1624010_a_at:530:725; Interrogation_Position=2283; Antisense; TTGAACGCTGGCAAGTGATCTCCCG
>probe:Drosophila_2:1624010_a_at:537:201; Interrogation_Position=2311; Antisense; AACCGAAGCAGTACCGATGCATTAT

Paste this into a BLAST search page for me
AAACGGCGCCTCAGTGGGTGACCGAGAAGAACATTCCCAAGTTCCTCAAAGTTCCTCAAAATACCGTTCTTCCTGAATGACCAAGCCTGAACGAACGAAGGAATTTATTCAGTGTCGCAAGGTCTGTGCTGAATGCGGAAACTACCCCAATAATTCGGAGGGATCCCAACTGCCAAACTGCCAGCTGAGGAACGAATTGATGTAACGATGTGGTTGTGGACCCCATTGTGGACCCCAACATGGACCTGCGGGTGCGCCACTTTATCTGGAAGCAGGTCGACCGATCTAACGTTTCAGTACTTGAACGCTGGCAAGTGATCTCCCGAACCGAAGCAGTACCGATGCATTAT

Full Affymetrix probeset data:

Annotations for 1624010_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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