FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624034_at:

>probe:Drosophila_2:1624034_at:321:383; Interrogation_Position=1141; Antisense; GAACTCAGAGATCGACTTTTCCGTC
>probe:Drosophila_2:1624034_at:536:351; Interrogation_Position=1173; Antisense; GCAGCTGTCGCATCGGAAGGTCCTT
>probe:Drosophila_2:1624034_at:245:371; Interrogation_Position=1188; Antisense; GAAGGTCCTTTTCACAGCCGCAGGA
>probe:Drosophila_2:1624034_at:663:73; Interrogation_Position=1209; Antisense; AGGACTTTTTCGTCTGGATCGCACA
>probe:Drosophila_2:1624034_at:361:95; Interrogation_Position=1303; Antisense; AGATTACTGGTGCTGCCACGTGCTA
>probe:Drosophila_2:1624034_at:430:509; Interrogation_Position=1322; Antisense; GTGCTACCTCATTATCCTAATTCAG
>probe:Drosophila_2:1624034_at:245:399; Interrogation_Position=1371; Antisense; GACACCAGCTCCAATTCAACAAATA
>probe:Drosophila_2:1624034_at:143:31; Interrogation_Position=835; Antisense; ATACACAATCTGCTCTGCGACATTT
>probe:Drosophila_2:1624034_at:394:401; Interrogation_Position=853; Antisense; GACATTTGCCAGACCATCGAGGAAT
>probe:Drosophila_2:1624034_at:223:565; Interrogation_Position=873; Antisense; GGAATACTTCACATATCCGCTGCTC
>probe:Drosophila_2:1624034_at:361:27; Interrogation_Position=904; Antisense; ATAGCCATATCCTTTCTGTTCATTC
>probe:Drosophila_2:1624034_at:185:125; Interrogation_Position=954; Antisense; AGCCATTCTGAATCCCAAACGACTG
>probe:Drosophila_2:1624034_at:441:407; Interrogation_Position=974; Antisense; GACTGGATGTCTTTGAGGCCGATGA
>probe:Drosophila_2:1624034_at:687:441; Interrogation_Position=994; Antisense; GATGAGTTCTTTGCCTTCTTCCTGA

Paste this into a BLAST search page for me
GAACTCAGAGATCGACTTTTCCGTCGCAGCTGTCGCATCGGAAGGTCCTTGAAGGTCCTTTTCACAGCCGCAGGAAGGACTTTTTCGTCTGGATCGCACAAGATTACTGGTGCTGCCACGTGCTAGTGCTACCTCATTATCCTAATTCAGGACACCAGCTCCAATTCAACAAATAATACACAATCTGCTCTGCGACATTTGACATTTGCCAGACCATCGAGGAATGGAATACTTCACATATCCGCTGCTCATAGCCATATCCTTTCTGTTCATTCAGCCATTCTGAATCCCAAACGACTGGACTGGATGTCTTTGAGGCCGATGAGATGAGTTCTTTGCCTTCTTCCTGA

Full Affymetrix probeset data:

Annotations for 1624034_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720