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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624083_s_at:

>probe:Drosophila_2:1624083_s_at:695:481; Interrogation_Position=1866; Antisense; GTATAGTGTCGGTCAGTTCAGTAAA
>probe:Drosophila_2:1624083_s_at:245:209; Interrogation_Position=1896; Antisense; AAGCAGTAGTTAGTACCTCCTTCAA
>probe:Drosophila_2:1624083_s_at:346:91; Interrogation_Position=1907; Antisense; AGTACCTCCTTCAATTATCATGCAA
>probe:Drosophila_2:1624083_s_at:409:659; Interrogation_Position=1972; Antisense; TAAATCCGTTGCCTAGAAATTATGC
>probe:Drosophila_2:1624083_s_at:170:15; Interrogation_Position=1990; Antisense; ATTATGCAACATTCTCATGTCCCCA
>probe:Drosophila_2:1624083_s_at:536:645; Interrogation_Position=2004; Antisense; TCATGTCCCCATTGTAAACTTATTT
>probe:Drosophila_2:1624083_s_at:359:17; Interrogation_Position=2043; Antisense; ATTTCTATTTGTTGTATGCGTTGTA
>probe:Drosophila_2:1624083_s_at:447:485; Interrogation_Position=2101; Antisense; GTATGTACATTACACTCTGTCTTTG
>probe:Drosophila_2:1624083_s_at:302:259; Interrogation_Position=2113; Antisense; CACTCTGTCTTTGTATTTTCTGTAA
>probe:Drosophila_2:1624083_s_at:669:601; Interrogation_Position=2124; Antisense; TGTATTTTCTGTAACCAACCATAAG
>probe:Drosophila_2:1624083_s_at:654:31; Interrogation_Position=2198; Antisense; ATAATTTTACCGGTATGCGCAGAAT
>probe:Drosophila_2:1624083_s_at:234:365; Interrogation_Position=2248; Antisense; GAATTTGCAATGTCTTTACAACCAA
>probe:Drosophila_2:1624083_s_at:724:27; Interrogation_Position=2273; Antisense; ATAAAGTCATCATAACCCTGGTTTT
>probe:Drosophila_2:1624083_s_at:190:179; Interrogation_Position=2304; Antisense; AAACATAATGAGACAGCGCCCATAA

Paste this into a BLAST search page for me
GTATAGTGTCGGTCAGTTCAGTAAAAAGCAGTAGTTAGTACCTCCTTCAAAGTACCTCCTTCAATTATCATGCAATAAATCCGTTGCCTAGAAATTATGCATTATGCAACATTCTCATGTCCCCATCATGTCCCCATTGTAAACTTATTTATTTCTATTTGTTGTATGCGTTGTAGTATGTACATTACACTCTGTCTTTGCACTCTGTCTTTGTATTTTCTGTAATGTATTTTCTGTAACCAACCATAAGATAATTTTACCGGTATGCGCAGAATGAATTTGCAATGTCTTTACAACCAAATAAAGTCATCATAACCCTGGTTTTAAACATAATGAGACAGCGCCCATAA

Full Affymetrix probeset data:

Annotations for 1624083_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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