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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624097_s_at:

>probe:Drosophila_2:1624097_s_at:278:481; Interrogation_Position=4476; Antisense; GTATTTCTATCGACGGGCAGACCAG
>probe:Drosophila_2:1624097_s_at:491:97; Interrogation_Position=4499; Antisense; AGATCGACCCTATATCGGACGCATT
>probe:Drosophila_2:1624097_s_at:451:579; Interrogation_Position=4567; Antisense; TGGCGTGGTTCTATCATCCGGAGGA
>probe:Drosophila_2:1624097_s_at:656:421; Interrogation_Position=4590; Antisense; GAGACGACCGGCTGTCCAAAATTGA
>probe:Drosophila_2:1624097_s_at:8:601; Interrogation_Position=4612; Antisense; TGAAATTTCCGGGTGCTCTTTTTGA
>probe:Drosophila_2:1624097_s_at:78:281; Interrogation_Position=4627; Antisense; CTCTTTTTGAATCGCCGCACGAGGA
>probe:Drosophila_2:1624097_s_at:99:383; Interrogation_Position=4655; Antisense; GAACGATGTGCAGACCATTTCGCAT
>probe:Drosophila_2:1624097_s_at:364:19; Interrogation_Position=4671; Antisense; ATTTCGCATCGGTGTGAGGTGCTGC
>probe:Drosophila_2:1624097_s_at:41:619; Interrogation_Position=4693; Antisense; TGCAGTTTGGCAGTTACTTCGAGAA
>probe:Drosophila_2:1624097_s_at:504:667; Interrogation_Position=4707; Antisense; TACTTCGAGAAGTTCGGTGCCGATT
>probe:Drosophila_2:1624097_s_at:250:535; Interrogation_Position=4722; Antisense; GGTGCCGATTCGAAGCAATATCAAT
>probe:Drosophila_2:1624097_s_at:146:457; Interrogation_Position=4764; Antisense; GATACATATTATTTAGCCGGGCACT
>probe:Drosophila_2:1624097_s_at:441:673; Interrogation_Position=4777; Antisense; TAGCCGGGCACTATAACCCAAGGTT
>probe:Drosophila_2:1624097_s_at:258:213; Interrogation_Position=4819; Antisense; AAGACGATATTCCAACTCTCGAAGA

Paste this into a BLAST search page for me
GTATTTCTATCGACGGGCAGACCAGAGATCGACCCTATATCGGACGCATTTGGCGTGGTTCTATCATCCGGAGGAGAGACGACCGGCTGTCCAAAATTGATGAAATTTCCGGGTGCTCTTTTTGACTCTTTTTGAATCGCCGCACGAGGAGAACGATGTGCAGACCATTTCGCATATTTCGCATCGGTGTGAGGTGCTGCTGCAGTTTGGCAGTTACTTCGAGAATACTTCGAGAAGTTCGGTGCCGATTGGTGCCGATTCGAAGCAATATCAATGATACATATTATTTAGCCGGGCACTTAGCCGGGCACTATAACCCAAGGTTAAGACGATATTCCAACTCTCGAAGA

Full Affymetrix probeset data:

Annotations for 1624097_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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