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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624151_a_at:

>probe:Drosophila_2:1624151_a_at:616:529; Interrogation_Position=2123; Antisense; GGCTTAAGCAACTCTAAACCAAACG
>probe:Drosophila_2:1624151_a_at:638:325; Interrogation_Position=2155; Antisense; GCGAGATCCGTGTGCATTCAAGTTA
>probe:Drosophila_2:1624151_a_at:89:145; Interrogation_Position=2194; Antisense; ACTCACTTGTATTCCGATCTACACG
>probe:Drosophila_2:1624151_a_at:612:483; Interrogation_Position=2222; Antisense; GTATGCCTAAGACTCTGCTTGAACA
>probe:Drosophila_2:1624151_a_at:244:103; Interrogation_Position=2273; Antisense; AGAGCCAGGATGATCGCCAGCTACG
>probe:Drosophila_2:1624151_a_at:451:313; Interrogation_Position=2288; Antisense; GCCAGCTACGAGGATCCTAGTCATA
>probe:Drosophila_2:1624151_a_at:20:641; Interrogation_Position=2308; Antisense; TCATAGTTTCGTTATACCCCAACCA
>probe:Drosophila_2:1624151_a_at:215:257; Interrogation_Position=2333; Antisense; CACATATCCCCGAAAATATCCCGAA
>probe:Drosophila_2:1624151_a_at:630:23; Interrogation_Position=2348; Antisense; ATATCCCGAATCGAGTTCTCTGATT
>probe:Drosophila_2:1624151_a_at:440:471; Interrogation_Position=2362; Antisense; GTTCTCTGATTTACGTCATGTGACG
>probe:Drosophila_2:1624151_a_at:438:63; Interrogation_Position=2379; Antisense; ATGTGACGAGCGAGGCTTAGCCATC
>probe:Drosophila_2:1624151_a_at:312:343; Interrogation_Position=2393; Antisense; GCTTAGCCATCACCCATATCAAATG
>probe:Drosophila_2:1624151_a_at:283:219; Interrogation_Position=2427; Antisense; AAGTCAACTCTTAGCTAGCGTCAGA
>probe:Drosophila_2:1624151_a_at:569:675; Interrogation_Position=2442; Antisense; TAGCGTCAGAGTTATCCGTGTGCCG

Paste this into a BLAST search page for me
GGCTTAAGCAACTCTAAACCAAACGGCGAGATCCGTGTGCATTCAAGTTAACTCACTTGTATTCCGATCTACACGGTATGCCTAAGACTCTGCTTGAACAAGAGCCAGGATGATCGCCAGCTACGGCCAGCTACGAGGATCCTAGTCATATCATAGTTTCGTTATACCCCAACCACACATATCCCCGAAAATATCCCGAAATATCCCGAATCGAGTTCTCTGATTGTTCTCTGATTTACGTCATGTGACGATGTGACGAGCGAGGCTTAGCCATCGCTTAGCCATCACCCATATCAAATGAAGTCAACTCTTAGCTAGCGTCAGATAGCGTCAGAGTTATCCGTGTGCCG

Full Affymetrix probeset data:

Annotations for 1624151_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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