FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624203_s_at:

>probe:Drosophila_2:1624203_s_at:694:659; Interrogation_Position=3527; Antisense; TAAAACTCACTTTTAGTGGCAGTAA
>probe:Drosophila_2:1624203_s_at:228:659; Interrogation_Position=3647; Antisense; TAAGACCTGCTATTATTTGATAACA
>probe:Drosophila_2:1624203_s_at:458:193; Interrogation_Position=3672; Antisense; AACTCATAACATTGTCACGTCCCGT
>probe:Drosophila_2:1624203_s_at:677:493; Interrogation_Position=3685; Antisense; GTCACGTCCCGTATTATAAGAATAT
>probe:Drosophila_2:1624203_s_at:89:365; Interrogation_Position=3715; Antisense; GAATACCATTAGATCGTAGCCACTC
>probe:Drosophila_2:1624203_s_at:670:421; Interrogation_Position=3754; Antisense; GAGCAATACACCTACAGTGCCTTAA
>probe:Drosophila_2:1624203_s_at:384:589; Interrogation_Position=3786; Antisense; TGGTAATTGTCCTCGATGGACCCAC
>probe:Drosophila_2:1624203_s_at:580:131; Interrogation_Position=3813; Antisense; ACCCCATCCATGATGTACCAACTAA
>probe:Drosophila_2:1624203_s_at:639:485; Interrogation_Position=3827; Antisense; GTACCAACTAAGTGTGCCTTTCATA
>probe:Drosophila_2:1624203_s_at:312:221; Interrogation_Position=3836; Antisense; AAGTGTGCCTTTCATACATACATAA
>probe:Drosophila_2:1624203_s_at:654:471; Interrogation_Position=3888; Antisense; GTTCTATATGTTCTGTGTGTCGCAT
>probe:Drosophila_2:1624203_s_at:120:509; Interrogation_Position=3941; Antisense; GTGAACCGTCCAATAACTTATGTTT
>probe:Drosophila_2:1624203_s_at:632:477; Interrogation_Position=3981; Antisense; GTTTTTCCTGTATATATCATCATTT
>probe:Drosophila_2:1624203_s_at:62:393; Interrogation_Position=4017; Antisense; GAAAGCATATTGTTTTTACCACATT

Paste this into a BLAST search page for me
TAAAACTCACTTTTAGTGGCAGTAATAAGACCTGCTATTATTTGATAACAAACTCATAACATTGTCACGTCCCGTGTCACGTCCCGTATTATAAGAATATGAATACCATTAGATCGTAGCCACTCGAGCAATACACCTACAGTGCCTTAATGGTAATTGTCCTCGATGGACCCACACCCCATCCATGATGTACCAACTAAGTACCAACTAAGTGTGCCTTTCATAAAGTGTGCCTTTCATACATACATAAGTTCTATATGTTCTGTGTGTCGCATGTGAACCGTCCAATAACTTATGTTTGTTTTTCCTGTATATATCATCATTTGAAAGCATATTGTTTTTACCACATT

Full Affymetrix probeset data:

Annotations for 1624203_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720