FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624215_s_at:

>probe:Drosophila_2:1624215_s_at:318:627; Interrogation_Position=3168; Antisense; TGCCTCTCTTAACGGACAGCAATCG
>probe:Drosophila_2:1624215_s_at:123:563; Interrogation_Position=3192; Antisense; GGAAGATTGCGACCCTGACGTCAAT
>probe:Drosophila_2:1624215_s_at:273:137; Interrogation_Position=3209; Antisense; ACGTCAATGGCGCAACTTTAAGCGA
>probe:Drosophila_2:1624215_s_at:148:123; Interrogation_Position=3229; Antisense; AGCGACACCACTTAAGACACCAACT
>probe:Drosophila_2:1624215_s_at:96:51; Interrogation_Position=3291; Antisense; ATGCCTCTCTTAACGGACAGCAATC
>probe:Drosophila_2:1624215_s_at:3:109; Interrogation_Position=3316; Antisense; AGAAGATTGCGACCCTGACGTCAAT
>probe:Drosophila_2:1624215_s_at:133:305; Interrogation_Position=3329; Antisense; CCTGACGTCAATGGCGCAACTTTAA
>probe:Drosophila_2:1624215_s_at:27:209; Interrogation_Position=3352; Antisense; AAGAATTCCTTTTCTGTCAAAGTGA
>probe:Drosophila_2:1624215_s_at:649:527; Interrogation_Position=3419; Antisense; GGGACAGCTCTTACTTATGATTTTT
>probe:Drosophila_2:1624215_s_at:180:681; Interrogation_Position=3434; Antisense; TATGATTTTTTAGGTGGGCCGGAGC
>probe:Drosophila_2:1624215_s_at:289:297; Interrogation_Position=3521; Antisense; CGCAGGATTCCTTGGTAATGCTGAT
>probe:Drosophila_2:1624215_s_at:583:51; Interrogation_Position=3538; Antisense; ATGCTGATTAATTTTTTCCGTGTAT
>probe:Drosophila_2:1624215_s_at:380:719; Interrogation_Position=3553; Antisense; TTCCGTGTATTTTGCGACACACTGT
>probe:Drosophila_2:1624215_s_at:267:325; Interrogation_Position=3566; Antisense; GCGACACACTGTGGGTTTGGTTTTT

Paste this into a BLAST search page for me
TGCCTCTCTTAACGGACAGCAATCGGGAAGATTGCGACCCTGACGTCAATACGTCAATGGCGCAACTTTAAGCGAAGCGACACCACTTAAGACACCAACTATGCCTCTCTTAACGGACAGCAATCAGAAGATTGCGACCCTGACGTCAATCCTGACGTCAATGGCGCAACTTTAAAAGAATTCCTTTTCTGTCAAAGTGAGGGACAGCTCTTACTTATGATTTTTTATGATTTTTTAGGTGGGCCGGAGCCGCAGGATTCCTTGGTAATGCTGATATGCTGATTAATTTTTTCCGTGTATTTCCGTGTATTTTGCGACACACTGTGCGACACACTGTGGGTTTGGTTTTT

Full Affymetrix probeset data:

Annotations for 1624215_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720