FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624347_s_at:

>probe:Drosophila_2:1624347_s_at:326:209; Interrogation_Position=1382; Antisense; AAGCATATCGATGCCACGCCGGAGA
>probe:Drosophila_2:1624347_s_at:4:547; Interrogation_Position=1402; Antisense; GGAGAACCGTCGCACTGTCCTCGGT
>probe:Drosophila_2:1624347_s_at:223:651; Interrogation_Position=1437; Antisense; TCACACCTCGTTACTTGCGGATGAC
>probe:Drosophila_2:1624347_s_at:589:149; Interrogation_Position=1449; Antisense; ACTTGCGGATGACCGCCAGCGAATT
>probe:Drosophila_2:1624347_s_at:681:323; Interrogation_Position=1467; Antisense; GCGAATTCCGGCGATGCTGCGAACG
>probe:Drosophila_2:1624347_s_at:616:619; Interrogation_Position=1481; Antisense; TGCTGCGAACGCCTGGAGCTACTGC
>probe:Drosophila_2:1624347_s_at:513:285; Interrogation_Position=1512; Antisense; CTGAGATATCTCTTATCACCGACGC
>probe:Drosophila_2:1624347_s_at:399:173; Interrogation_Position=1549; Antisense; AAAGCTAAAGAACCTCACCGATCAG
>probe:Drosophila_2:1624347_s_at:391:419; Interrogation_Position=1648; Antisense; GAGCAGTCCGAAGAACTATCCCAAG
>probe:Drosophila_2:1624347_s_at:210:679; Interrogation_Position=1664; Antisense; TATCCCAAGAAGATGCGGCTGGCCC
>probe:Drosophila_2:1624347_s_at:135:519; Interrogation_Position=1727; Antisense; GTGGGAATGAACTGTCTCCGCATCT
>probe:Drosophila_2:1624347_s_at:513:499; Interrogation_Position=1754; Antisense; GTCTGCATATTTGACTGATCCGAGC
>probe:Drosophila_2:1624347_s_at:646:677; Interrogation_Position=1867; Antisense; TAGAGCGGGCAGAAATCGATCCAGA
>probe:Drosophila_2:1624347_s_at:598:443; Interrogation_Position=1910; Antisense; GATGATCCCACATAGACTTGTTGCA

Paste this into a BLAST search page for me
AAGCATATCGATGCCACGCCGGAGAGGAGAACCGTCGCACTGTCCTCGGTTCACACCTCGTTACTTGCGGATGACACTTGCGGATGACCGCCAGCGAATTGCGAATTCCGGCGATGCTGCGAACGTGCTGCGAACGCCTGGAGCTACTGCCTGAGATATCTCTTATCACCGACGCAAAGCTAAAGAACCTCACCGATCAGGAGCAGTCCGAAGAACTATCCCAAGTATCCCAAGAAGATGCGGCTGGCCCGTGGGAATGAACTGTCTCCGCATCTGTCTGCATATTTGACTGATCCGAGCTAGAGCGGGCAGAAATCGATCCAGAGATGATCCCACATAGACTTGTTGCA

Full Affymetrix probeset data:

Annotations for 1624347_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720