FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624348_a_at:

>probe:Drosophila_2:1624348_a_at:75:315; Interrogation_Position=3616; Antisense; GCCCGGGTACAATCCATTCCAGGAG
>probe:Drosophila_2:1624348_a_at:622:543; Interrogation_Position=3683; Antisense; GGATTTCCGCGATTCTACAATCAGA
>probe:Drosophila_2:1624348_a_at:425:263; Interrogation_Position=3704; Antisense; CAGAACTATCGCCAGAACTTCCAGC
>probe:Drosophila_2:1624348_a_at:638:717; Interrogation_Position=3722; Antisense; TTCCAGCAGCGCAACAAGTTCAAGT
>probe:Drosophila_2:1624348_a_at:406:215; Interrogation_Position=3737; Antisense; AAGTTCAAGTTCAACCGCTTCGGAG
>probe:Drosophila_2:1624348_a_at:156:437; Interrogation_Position=3759; Antisense; GAGGACCAGGCAGCGCCAAGTTCCA
>probe:Drosophila_2:1624348_a_at:412:123; Interrogation_Position=3789; Antisense; AGCGAGCCCTGCAACGACATCTGTC
>probe:Drosophila_2:1624348_a_at:593:329; Interrogation_Position=3819; Antisense; GCGGTGGCTTCAGTCGGCGACAACC
>probe:Drosophila_2:1624348_a_at:9:353; Interrogation_Position=3859; Antisense; GCAGCAAACCTAACTGGATGCGGAT
>probe:Drosophila_2:1624348_a_at:242:423; Interrogation_Position=3897; Antisense; GAGAAAGAGATGACGCCGATGCGAC
>probe:Drosophila_2:1624348_a_at:92:407; Interrogation_Position=3919; Antisense; GACTGCGGCGTGTGCATTTGTTATT
>probe:Drosophila_2:1624348_a_at:518:491; Interrogation_Position=3968; Antisense; GTAAACGTTTTTTAACTGCTGATGA
>probe:Drosophila_2:1624348_a_at:402:653; Interrogation_Position=4047; Antisense; TAATTGTTGCCTCCCAAAATCATCC
>probe:Drosophila_2:1624348_a_at:381:131; Interrogation_Position=4081; Antisense; ACCGAAGCACACAGTCCCATTAGAA

Paste this into a BLAST search page for me
GCCCGGGTACAATCCATTCCAGGAGGGATTTCCGCGATTCTACAATCAGACAGAACTATCGCCAGAACTTCCAGCTTCCAGCAGCGCAACAAGTTCAAGTAAGTTCAAGTTCAACCGCTTCGGAGGAGGACCAGGCAGCGCCAAGTTCCAAGCGAGCCCTGCAACGACATCTGTCGCGGTGGCTTCAGTCGGCGACAACCGCAGCAAACCTAACTGGATGCGGATGAGAAAGAGATGACGCCGATGCGACGACTGCGGCGTGTGCATTTGTTATTGTAAACGTTTTTTAACTGCTGATGATAATTGTTGCCTCCCAAAATCATCCACCGAAGCACACAGTCCCATTAGAA

Full Affymetrix probeset data:

Annotations for 1624348_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720