FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624374_at:

>probe:Drosophila_2:1624374_at:259:437; Interrogation_Position=117; Antisense; GATGGAACCGATGCGTTATCACTTC
>probe:Drosophila_2:1624374_at:230:69; Interrogation_Position=13; Antisense; ATGGCGCTGTTAGCTTCAACTGGCG
>probe:Drosophila_2:1624374_at:682:703; Interrogation_Position=132; Antisense; TTATCACTTCGTCACCGAGCATAGA
>probe:Drosophila_2:1624374_at:632:21; Interrogation_Position=152; Antisense; ATAGACCCACTTCGTTGGGCCAGAA
>probe:Drosophila_2:1624374_at:377:363; Interrogation_Position=174; Antisense; GAACTATTACATCAAACCGGGTCAG
>probe:Drosophila_2:1624374_at:644:565; Interrogation_Position=205; Antisense; GGCAGTATTACCCTGGACTCGGATA
>probe:Drosophila_2:1624374_at:563:543; Interrogation_Position=225; Antisense; GGATACCCTGCAGGTGCGATACGAT
>probe:Drosophila_2:1624374_at:730:109; Interrogation_Position=274; Antisense; AGCAAGCACAACATCCTGTTCGTGG
>probe:Drosophila_2:1624374_at:556:581; Interrogation_Position=314; Antisense; TGGCCCAAAAGTCCAGACAGCGGAA
>probe:Drosophila_2:1624374_at:376:319; Interrogation_Position=37; Antisense; GCCCAACCGGTGAGCCAGACGGAAA
>probe:Drosophila_2:1624374_at:458:141; Interrogation_Position=55; Antisense; ACGGAAATGGAACCGATGCTCATCA
>probe:Drosophila_2:1624374_at:49:131; Interrogation_Position=66; Antisense; ACCGATGCTCATCAATGTGACCACA
>probe:Drosophila_2:1624374_at:315:595; Interrogation_Position=81; Antisense; TGTGACCACAAGCAGACCCAAGCTG
>probe:Drosophila_2:1624374_at:484:133; Interrogation_Position=96; Antisense; ACCCAAGCTGGTCATTGAGGAGATG

Paste this into a BLAST search page for me
GATGGAACCGATGCGTTATCACTTCATGGCGCTGTTAGCTTCAACTGGCGTTATCACTTCGTCACCGAGCATAGAATAGACCCACTTCGTTGGGCCAGAAGAACTATTACATCAAACCGGGTCAGGGCAGTATTACCCTGGACTCGGATAGGATACCCTGCAGGTGCGATACGATAGCAAGCACAACATCCTGTTCGTGGTGGCCCAAAAGTCCAGACAGCGGAAGCCCAACCGGTGAGCCAGACGGAAAACGGAAATGGAACCGATGCTCATCAACCGATGCTCATCAATGTGACCACATGTGACCACAAGCAGACCCAAGCTGACCCAAGCTGGTCATTGAGGAGATG

Full Affymetrix probeset data:

Annotations for 1624374_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720