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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624377_s_at:

>probe:Drosophila_2:1624377_s_at:586:3; Interrogation_Position=6701; Antisense; ATTGTACACACCCTTAAGCCTAATA
>probe:Drosophila_2:1624377_s_at:167:599; Interrogation_Position=6703; Antisense; TGTACACACCCTTAAGCCTAATAAA
>probe:Drosophila_2:1624377_s_at:182:677; Interrogation_Position=6739; Antisense; TAGAACATAAGGACATTGTACAATT
>probe:Drosophila_2:1624377_s_at:14:35; Interrogation_Position=6780; Antisense; ATCACAGTTTGTATAGTAGTATCAA
>probe:Drosophila_2:1624377_s_at:440:485; Interrogation_Position=6795; Antisense; GTAGTATCAATCATAAGCCTCACAT
>probe:Drosophila_2:1624377_s_at:173:127; Interrogation_Position=6810; Antisense; AGCCTCACATCTTGTATTGCTTGTA
>probe:Drosophila_2:1624377_s_at:87:259; Interrogation_Position=6815; Antisense; CACATCTTGTATTGCTTGTATTTAC
>probe:Drosophila_2:1624377_s_at:628:481; Interrogation_Position=6823; Antisense; GTATTGCTTGTATTTACTTAAAACT
>probe:Drosophila_2:1624377_s_at:13:367; Interrogation_Position=6867; Antisense; GAATCACAAGATGCAAATCCAACTG
>probe:Drosophila_2:1624377_s_at:422:195; Interrogation_Position=6887; Antisense; AACTGCATCACCAAGATTGCGGGCA
>probe:Drosophila_2:1624377_s_at:13:347; Interrogation_Position=6891; Antisense; GCATCACCAAGATTGCGGGCATCAA
>probe:Drosophila_2:1624377_s_at:542:215; Interrogation_Position=6899; Antisense; AAGATTGCGGGCATCAACACCAATA
>probe:Drosophila_2:1624377_s_at:342:623; Interrogation_Position=6904; Antisense; TGCGGGCATCAACACCAATAGAAGG
>probe:Drosophila_2:1624377_s_at:211:377; Interrogation_Position=6933; Antisense; GAAGCATAAGCTTCCCTTTTAAAGG

Paste this into a BLAST search page for me
ATTGTACACACCCTTAAGCCTAATATGTACACACCCTTAAGCCTAATAAATAGAACATAAGGACATTGTACAATTATCACAGTTTGTATAGTAGTATCAAGTAGTATCAATCATAAGCCTCACATAGCCTCACATCTTGTATTGCTTGTACACATCTTGTATTGCTTGTATTTACGTATTGCTTGTATTTACTTAAAACTGAATCACAAGATGCAAATCCAACTGAACTGCATCACCAAGATTGCGGGCAGCATCACCAAGATTGCGGGCATCAAAAGATTGCGGGCATCAACACCAATATGCGGGCATCAACACCAATAGAAGGGAAGCATAAGCTTCCCTTTTAAAGG

Full Affymetrix probeset data:

Annotations for 1624377_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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