FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624392_s_at:

>probe:Drosophila_2:1624392_s_at:231:435; Interrogation_Position=1889; Antisense; GAGGAGGTTTGTTTCACCAACAGCA
>probe:Drosophila_2:1624392_s_at:319:111; Interrogation_Position=1965; Antisense; AGCACGTCGTCCTCAGCTAGCGTTG
>probe:Drosophila_2:1624392_s_at:341:335; Interrogation_Position=1980; Antisense; GCTAGCGTTGGCGTTCTAATTGGTT
>probe:Drosophila_2:1624392_s_at:561:653; Interrogation_Position=1996; Antisense; TAATTGGTTCCGTGAATGCCGCCGC
>probe:Drosophila_2:1624392_s_at:370:175; Interrogation_Position=2027; Antisense; AAACCACTCGACAACGGACACAATG
>probe:Drosophila_2:1624392_s_at:714:155; Interrogation_Position=2044; Antisense; ACACAATGTGGCAGAGTTTTCCGGG
>probe:Drosophila_2:1624392_s_at:580:183; Interrogation_Position=2077; Antisense; AAAATTCGGTTCAACCTGGCTGGCG
>probe:Drosophila_2:1624392_s_at:526:503; Interrogation_Position=2116; Antisense; GTCCGTTGTTGCTTCGGGTATACTT
>probe:Drosophila_2:1624392_s_at:508:437; Interrogation_Position=2159; Antisense; GAGGACCTGGGATCAGTGTAACACA
>probe:Drosophila_2:1624392_s_at:631:195; Interrogation_Position=2216; Antisense; AACGGTTCATAAACTCTACTTACTG
>probe:Drosophila_2:1624392_s_at:337:193; Interrogation_Position=2227; Antisense; AACTCTACTTACTGAGAAGCGCGAA
>probe:Drosophila_2:1624392_s_at:571:379; Interrogation_Position=2371; Antisense; GAACCACTTCAATTGTCTAATCGTA
>probe:Drosophila_2:1624392_s_at:170:499; Interrogation_Position=2385; Antisense; GTCTAATCGTATTTCAATTTGTCTG
>probe:Drosophila_2:1624392_s_at:245:485; Interrogation_Position=2425; Antisense; GTATGTCTCTACATTGAACGTATGT

Paste this into a BLAST search page for me
GAGGAGGTTTGTTTCACCAACAGCAAGCACGTCGTCCTCAGCTAGCGTTGGCTAGCGTTGGCGTTCTAATTGGTTTAATTGGTTCCGTGAATGCCGCCGCAAACCACTCGACAACGGACACAATGACACAATGTGGCAGAGTTTTCCGGGAAAATTCGGTTCAACCTGGCTGGCGGTCCGTTGTTGCTTCGGGTATACTTGAGGACCTGGGATCAGTGTAACACAAACGGTTCATAAACTCTACTTACTGAACTCTACTTACTGAGAAGCGCGAAGAACCACTTCAATTGTCTAATCGTAGTCTAATCGTATTTCAATTTGTCTGGTATGTCTCTACATTGAACGTATGT

Full Affymetrix probeset data:

Annotations for 1624392_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720