FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624470_at:

>probe:Drosophila_2:1624470_at:435:143; Interrogation_Position=2285; Antisense; ACTGAACGGTCTCTTCTAGGCAGAA
>probe:Drosophila_2:1624470_at:721:511; Interrogation_Position=2361; Antisense; GGTTTCAACTTGTGCAATACCCCAC
>probe:Drosophila_2:1624470_at:194:311; Interrogation_Position=2426; Antisense; CCACATCTCCAAGCAGCATTTTGTA
>probe:Drosophila_2:1624470_at:614:343; Interrogation_Position=2441; Antisense; GCATTTTGTACATAGCGTATCCCTA
>probe:Drosophila_2:1624470_at:610:327; Interrogation_Position=2455; Antisense; GCGTATCCCTAAGAAGTCTCACAGA
>probe:Drosophila_2:1624470_at:692:383; Interrogation_Position=2478; Antisense; GAACACTCTACTTAAGCAGCTCTCT
>probe:Drosophila_2:1624470_at:256:353; Interrogation_Position=2493; Antisense; GCAGCTCTCTCGATGTATAGATGTA
>probe:Drosophila_2:1624470_at:232:79; Interrogation_Position=2523; Antisense; AGGATTTACCTAGTTAGTCGCCAAT
>probe:Drosophila_2:1624470_at:377:679; Interrogation_Position=2537; Antisense; TAGTCGCCAATACCGAAAGCCCTGA
>probe:Drosophila_2:1624470_at:4:175; Interrogation_Position=2552; Antisense; AAAGCCCTGAGTTCCGTGTAGACAC
>probe:Drosophila_2:1624470_at:124:659; Interrogation_Position=2625; Antisense; TAACATTGCGTTACAGCTTTTTGGG
>probe:Drosophila_2:1624470_at:196:429; Interrogation_Position=2688; Antisense; GAGTTGCACTAGATATCCGTACGTA
>probe:Drosophila_2:1624470_at:322:489; Interrogation_Position=2710; Antisense; GTACTCTATCCCTAAGTGTCTGTGT
>probe:Drosophila_2:1624470_at:544:515; Interrogation_Position=2725; Antisense; GTGTCTGTGTAACCCAACGCAAATT

Paste this into a BLAST search page for me
ACTGAACGGTCTCTTCTAGGCAGAAGGTTTCAACTTGTGCAATACCCCACCCACATCTCCAAGCAGCATTTTGTAGCATTTTGTACATAGCGTATCCCTAGCGTATCCCTAAGAAGTCTCACAGAGAACACTCTACTTAAGCAGCTCTCTGCAGCTCTCTCGATGTATAGATGTAAGGATTTACCTAGTTAGTCGCCAATTAGTCGCCAATACCGAAAGCCCTGAAAAGCCCTGAGTTCCGTGTAGACACTAACATTGCGTTACAGCTTTTTGGGGAGTTGCACTAGATATCCGTACGTAGTACTCTATCCCTAAGTGTCTGTGTGTGTCTGTGTAACCCAACGCAAATT

Full Affymetrix probeset data:

Annotations for 1624470_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720