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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624502_a_at:

>probe:Drosophila_2:1624502_a_at:515:647; Interrogation_Position=1988; Antisense; TCAGGAGTGCGAGGCCCAATACCGT
>probe:Drosophila_2:1624502_a_at:135:673; Interrogation_Position=2007; Antisense; TACCGTGCCGCGTTGCTTGAGCAAA
>probe:Drosophila_2:1624502_a_at:479:611; Interrogation_Position=2054; Antisense; TGACGACTTTGAACTGGCGACCGAA
>probe:Drosophila_2:1624502_a_at:638:35; Interrogation_Position=2223; Antisense; ATCTTGTTCACCACGATCACTGGTA
>probe:Drosophila_2:1624502_a_at:323:487; Interrogation_Position=2245; Antisense; GTAGCATTTTGCACGCGTCCGGAAA
>probe:Drosophila_2:1624502_a_at:207:387; Interrogation_Position=2266; Antisense; GAAAATTCGTTTCTGCCATACTGCA
>probe:Drosophila_2:1624502_a_at:729:345; Interrogation_Position=2291; Antisense; GCATATTCGCGGCTCACTAAACGAG
>probe:Drosophila_2:1624502_a_at:130:111; Interrogation_Position=2320; Antisense; AGAATGCTCTGTTGCTTCGGTATCA
>probe:Drosophila_2:1624502_a_at:466:537; Interrogation_Position=2338; Antisense; GGTATCACGATTTGGTCCTGCAAGT
>probe:Drosophila_2:1624502_a_at:5:269; Interrogation_Position=2367; Antisense; CAGGCCATTCCCGATAGCAATGAGT
>probe:Drosophila_2:1624502_a_at:578:587; Interrogation_Position=2437; Antisense; TGGAGCTAGCTCAAAACTTTTCACG
>probe:Drosophila_2:1624502_a_at:609:257; Interrogation_Position=2458; Antisense; CACGTGCATCGATTTCTAAGGCTGA
>probe:Drosophila_2:1624502_a_at:448:573; Interrogation_Position=2477; Antisense; GGCTGATTGATGATGCTCCTATATT
>probe:Drosophila_2:1624502_a_at:163:689; Interrogation_Position=2496; Antisense; TATATTCCAATCTTTCTTCCCATGT

Paste this into a BLAST search page for me
TCAGGAGTGCGAGGCCCAATACCGTTACCGTGCCGCGTTGCTTGAGCAAATGACGACTTTGAACTGGCGACCGAAATCTTGTTCACCACGATCACTGGTAGTAGCATTTTGCACGCGTCCGGAAAGAAAATTCGTTTCTGCCATACTGCAGCATATTCGCGGCTCACTAAACGAGAGAATGCTCTGTTGCTTCGGTATCAGGTATCACGATTTGGTCCTGCAAGTCAGGCCATTCCCGATAGCAATGAGTTGGAGCTAGCTCAAAACTTTTCACGCACGTGCATCGATTTCTAAGGCTGAGGCTGATTGATGATGCTCCTATATTTATATTCCAATCTTTCTTCCCATGT

Full Affymetrix probeset data:

Annotations for 1624502_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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