FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624520_a_at:

>probe:Drosophila_2:1624520_a_at:680:7; Interrogation_Position=3369; Antisense; ATTCGTGTTTTATTTGTAGTCCCTG
>probe:Drosophila_2:1624520_a_at:464:601; Interrogation_Position=3383; Antisense; TGTAGTCCCTGATAAAGCAATTTTA
>probe:Drosophila_2:1624520_a_at:235:185; Interrogation_Position=3409; Antisense; AACACTTGAACCTAAACGAGAATAT
>probe:Drosophila_2:1624520_a_at:479:663; Interrogation_Position=3458; Antisense; TAAATACGGCAAGGAGAAACACACT
>probe:Drosophila_2:1624520_a_at:628:389; Interrogation_Position=3473; Antisense; GAAACACACTTTTTTAGGCATTACA
>probe:Drosophila_2:1624520_a_at:377:1; Interrogation_Position=3586; Antisense; ATTGGCGTACTTTTAGCGTCCTACA
>probe:Drosophila_2:1624520_a_at:235:705; Interrogation_Position=3598; Antisense; TTAGCGTCCTACATATTTTTTAATT
>probe:Drosophila_2:1624520_a_at:161:395; Interrogation_Position=3647; Antisense; GAAATTAGTATCGTTCCCACTTGAA
>probe:Drosophila_2:1624520_a_at:524:291; Interrogation_Position=3658; Antisense; CGTTCCCACTTGAAGATCGATTCTT
>probe:Drosophila_2:1624520_a_at:227:701; Interrogation_Position=3687; Antisense; TTTTTTGCGCCAAGTGTCTTGCATA
>probe:Drosophila_2:1624520_a_at:518:515; Interrogation_Position=3700; Antisense; GTGTCTTGCATAGTATTTGCGTCTA
>probe:Drosophila_2:1624520_a_at:120:679; Interrogation_Position=3710; Antisense; TAGTATTTGCGTCTAATCTAATGGC
>probe:Drosophila_2:1624520_a_at:286:173; Interrogation_Position=3778; Antisense; AAAGCAAATTTAGGTGTTCATGGTA
>probe:Drosophila_2:1624520_a_at:620:615; Interrogation_Position=3855; Antisense; TGCAAACAACTACCTACAACAAGAT

Paste this into a BLAST search page for me
ATTCGTGTTTTATTTGTAGTCCCTGTGTAGTCCCTGATAAAGCAATTTTAAACACTTGAACCTAAACGAGAATATTAAATACGGCAAGGAGAAACACACTGAAACACACTTTTTTAGGCATTACAATTGGCGTACTTTTAGCGTCCTACATTAGCGTCCTACATATTTTTTAATTGAAATTAGTATCGTTCCCACTTGAACGTTCCCACTTGAAGATCGATTCTTTTTTTTGCGCCAAGTGTCTTGCATAGTGTCTTGCATAGTATTTGCGTCTATAGTATTTGCGTCTAATCTAATGGCAAAGCAAATTTAGGTGTTCATGGTATGCAAACAACTACCTACAACAAGAT

Full Affymetrix probeset data:

Annotations for 1624520_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720