Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624537_s_at:

>probe:Drosophila_2:1624537_s_at:457:171; Interrogation_Position=3025; Antisense; AAAGTCAGAGCCACTCGCCACAGCA
>probe:Drosophila_2:1624537_s_at:237:313; Interrogation_Position=3041; Antisense; GCCACAGCAGCTCCTCAAAAAGCAG
>probe:Drosophila_2:1624537_s_at:693:309; Interrogation_Position=3157; Antisense; CCAACAGCAATCCTCCCTGGAAGGG
>probe:Drosophila_2:1624537_s_at:520:561; Interrogation_Position=3181; Antisense; GGAACAGTTCCAATCCGGGAGGCAA
>probe:Drosophila_2:1624537_s_at:509:113; Interrogation_Position=3219; Antisense; AGCAGCGACTTGATGCGCGTCTTCG
>probe:Drosophila_2:1624537_s_at:713:497; Interrogation_Position=3237; Antisense; GTCTTCGTCTGATCTGAACCGATGG
>probe:Drosophila_2:1624537_s_at:114:371; Interrogation_Position=3263; Antisense; GAAGGTCAGATGTGCGGACACGCAT
>probe:Drosophila_2:1624537_s_at:410:559; Interrogation_Position=3278; Antisense; GGACACGCATCCCTAGTTATATGTT
>probe:Drosophila_2:1624537_s_at:519:241; Interrogation_Position=3308; Antisense; AATACCATGCTATTATGTGCAGCCT
>probe:Drosophila_2:1624537_s_at:575:617; Interrogation_Position=3325; Antisense; TGCAGCCTCTTCTCTAATGCTAAAT
>probe:Drosophila_2:1624537_s_at:484:149; Interrogation_Position=3469; Antisense; ACATATTATTTTTCGTGGCTAAGCA
>probe:Drosophila_2:1624537_s_at:344:209; Interrogation_Position=3489; Antisense; AAGCATTATGCTAGGTACTCGTAAA
>probe:Drosophila_2:1624537_s_at:444:251; Interrogation_Position=3548; Antisense; CAAGAGCATGCCTAAGTTCAATTAT
>probe:Drosophila_2:1624537_s_at:368:217; Interrogation_Position=3561; Antisense; AAGTTCAATTATACTCCAGACCCAG

Paste this into a BLAST search page for me
AAAGTCAGAGCCACTCGCCACAGCAGCCACAGCAGCTCCTCAAAAAGCAGCCAACAGCAATCCTCCCTGGAAGGGGGAACAGTTCCAATCCGGGAGGCAAAGCAGCGACTTGATGCGCGTCTTCGGTCTTCGTCTGATCTGAACCGATGGGAAGGTCAGATGTGCGGACACGCATGGACACGCATCCCTAGTTATATGTTAATACCATGCTATTATGTGCAGCCTTGCAGCCTCTTCTCTAATGCTAAATACATATTATTTTTCGTGGCTAAGCAAAGCATTATGCTAGGTACTCGTAAACAAGAGCATGCCTAAGTTCAATTATAAGTTCAATTATACTCCAGACCCAG

Full Affymetrix probeset data:

Annotations for 1624537_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime