FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624556_s_at:

>probe:Drosophila_2:1624556_s_at:110:663; Interrogation_Position=2041; Antisense; TAAACAACGTCGTTTCCCATCACAT
>probe:Drosophila_2:1624556_s_at:648:693; Interrogation_Position=2066; Antisense; TTTACCCACTCAGCCAGCTAAAAAA
>probe:Drosophila_2:1624556_s_at:337:379; Interrogation_Position=2105; Antisense; GAAGCGTTGCCGAATCATATCCAAA
>probe:Drosophila_2:1624556_s_at:144:147; Interrogation_Position=2129; Antisense; ACTTCTTCAAAATCGGGAGCCCCAG
>probe:Drosophila_2:1624556_s_at:177:415; Interrogation_Position=2145; Antisense; GAGCCCCAGTGGGAACAACCCAAGT
>probe:Drosophila_2:1624556_s_at:709:301; Interrogation_Position=2176; Antisense; CCGTACCATCATAACCAACTGCAAG
>probe:Drosophila_2:1624556_s_at:81:211; Interrogation_Position=2198; Antisense; AAGAATCCGCTGCTATATTATCGCC
>probe:Drosophila_2:1624556_s_at:663:45; Interrogation_Position=2225; Antisense; ATCCGAGCTCTTGGCCCTAAAGGAA
>probe:Drosophila_2:1624556_s_at:190:215; Interrogation_Position=2244; Antisense; AAGGAAGCGTTTTGACCATTGGACA
>probe:Drosophila_2:1624556_s_at:718:413; Interrogation_Position=2257; Antisense; GACCATTGGACAGCGCTACATTAGC
>probe:Drosophila_2:1624556_s_at:46:613; Interrogation_Position=2284; Antisense; TGCAAAATGTTTTGGGCTCCGTTTT
>probe:Drosophila_2:1624556_s_at:534:539; Interrogation_Position=2316; Antisense; GGTTATCGTACCGAAATTTCACCAT
>probe:Drosophila_2:1624556_s_at:704:655; Interrogation_Position=2349; Antisense; TAAGGCTTAGGTTCTTTTCGCCGAT
>probe:Drosophila_2:1624556_s_at:54:465; Interrogation_Position=2472; Antisense; GATTCGCTTGTAGAATGTCTCATTC

Paste this into a BLAST search page for me
TAAACAACGTCGTTTCCCATCACATTTTACCCACTCAGCCAGCTAAAAAAGAAGCGTTGCCGAATCATATCCAAAACTTCTTCAAAATCGGGAGCCCCAGGAGCCCCAGTGGGAACAACCCAAGTCCGTACCATCATAACCAACTGCAAGAAGAATCCGCTGCTATATTATCGCCATCCGAGCTCTTGGCCCTAAAGGAAAAGGAAGCGTTTTGACCATTGGACAGACCATTGGACAGCGCTACATTAGCTGCAAAATGTTTTGGGCTCCGTTTTGGTTATCGTACCGAAATTTCACCATTAAGGCTTAGGTTCTTTTCGCCGATGATTCGCTTGTAGAATGTCTCATTC

Full Affymetrix probeset data:

Annotations for 1624556_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720