FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624575_a_at:

>probe:Drosophila_2:1624575_a_at:588:233; Interrogation_Position=3871; Antisense; AATATCGACGGCTCCAAGGCCTGGC
>probe:Drosophila_2:1624575_a_at:443:227; Interrogation_Position=3886; Antisense; AAGGCCTGGCACATGCGGCTAACTT
>probe:Drosophila_2:1624575_a_at:38:53; Interrogation_Position=3898; Antisense; ATGCGGCTAACTTTCGAGCGCCTCT
>probe:Drosophila_2:1624575_a_at:541:207; Interrogation_Position=3949; Antisense; AAGCTGTGCGGCAAGGTCGTCACGC
>probe:Drosophila_2:1624575_a_at:654:127; Interrogation_Position=4036; Antisense; ACCTATACGCGCAGCGACAATTTGC
>probe:Drosophila_2:1624575_a_at:620:19; Interrogation_Position=4055; Antisense; ATTTGCGCACCCACTGCAAGTTCAA
>probe:Drosophila_2:1624575_a_at:18:473; Interrogation_Position=4074; Antisense; GTTCAAGCATCCCATGTACAATCCG
>probe:Drosophila_2:1624575_a_at:224:601; Interrogation_Position=4088; Antisense; TGTACAATCCGGATACGCGCAAGTT
>probe:Drosophila_2:1624575_a_at:580:455; Interrogation_Position=4099; Antisense; GATACGCGCAAGTTTGACAACCTAA
>probe:Drosophila_2:1624575_a_at:505:189; Interrogation_Position=4117; Antisense; AACCTAATGTCCTCGTCGGCGGTGG
>probe:Drosophila_2:1624575_a_at:320:127; Interrogation_Position=4165; Antisense; AGCCAATTGGCGGTGGCCTCCCAAG
>probe:Drosophila_2:1624575_a_at:708:573; Interrogation_Position=4212; Antisense; GGCGGCCTTCAATGCAGCGCAACAG
>probe:Drosophila_2:1624575_a_at:710:49; Interrogation_Position=4346; Antisense; ATGCCCTTGCGCAGCAGCACATGCT
>probe:Drosophila_2:1624575_a_at:108:115; Interrogation_Position=4397; Antisense; AGCAGCAGCACAATGCCACAAGTGA

Paste this into a BLAST search page for me
AATATCGACGGCTCCAAGGCCTGGCAAGGCCTGGCACATGCGGCTAACTTATGCGGCTAACTTTCGAGCGCCTCTAAGCTGTGCGGCAAGGTCGTCACGCACCTATACGCGCAGCGACAATTTGCATTTGCGCACCCACTGCAAGTTCAAGTTCAAGCATCCCATGTACAATCCGTGTACAATCCGGATACGCGCAAGTTGATACGCGCAAGTTTGACAACCTAAAACCTAATGTCCTCGTCGGCGGTGGAGCCAATTGGCGGTGGCCTCCCAAGGGCGGCCTTCAATGCAGCGCAACAGATGCCCTTGCGCAGCAGCACATGCTAGCAGCAGCACAATGCCACAAGTGA

Full Affymetrix probeset data:

Annotations for 1624575_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720