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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624603_at:

>probe:Drosophila_2:1624603_at:124:423; Interrogation_Position=409; Antisense; GAGAAGCCCCGCGTGGAACCGAAGA
>probe:Drosophila_2:1624603_at:291:651; Interrogation_Position=440; Antisense; TCAAGATTGGACGACCCGGCTACCG
>probe:Drosophila_2:1624603_at:64:611; Interrogation_Position=467; Antisense; TGACCAAGCAGCGTGAACTCAGCAA
>probe:Drosophila_2:1624603_at:309:115; Interrogation_Position=497; Antisense; AGCAGTCGTTGCTCTTTCAGGTGGA
>probe:Drosophila_2:1624603_at:3:713; Interrogation_Position=512; Antisense; TTCAGGTGGACTACCCGGAAATCAC
>probe:Drosophila_2:1624603_at:421:237; Interrogation_Position=531; Antisense; AATCACGGAGTCCATTGTTCCGCGT
>probe:Drosophila_2:1624603_at:615:713; Interrogation_Position=562; Antisense; TTCATGTCCGCCTACGAGCAAAAGA
>probe:Drosophila_2:1624603_at:205:361; Interrogation_Position=602; Antisense; GCAAGTGGCAGTACCTTCTCTTTGC
>probe:Drosophila_2:1624603_at:240:303; Interrogation_Position=629; Antisense; CCGAGCCGTACGAGACCATAGGGTT
>probe:Drosophila_2:1624603_at:33:83; Interrogation_Position=686; Antisense; AGGGCAAGTTCTGGACGCACTGGAA
>probe:Drosophila_2:1624603_at:332:563; Interrogation_Position=707; Antisense; GGAACCGTGACACCAAGCAGTTCTT
>probe:Drosophila_2:1624603_at:540:215; Interrogation_Position=748; Antisense; AAGTTCGAACCTAAGATCCTGCCGC
>probe:Drosophila_2:1624603_at:457:53; Interrogation_Position=847; Antisense; ATGCATCCCATGTTCAATGGCGTTC
>probe:Drosophila_2:1624603_at:335:177; Interrogation_Position=933; Antisense; AAACGCAAGCCGATTACCACAGAAA

Paste this into a BLAST search page for me
GAGAAGCCCCGCGTGGAACCGAAGATCAAGATTGGACGACCCGGCTACCGTGACCAAGCAGCGTGAACTCAGCAAAGCAGTCGTTGCTCTTTCAGGTGGATTCAGGTGGACTACCCGGAAATCACAATCACGGAGTCCATTGTTCCGCGTTTCATGTCCGCCTACGAGCAAAAGAGCAAGTGGCAGTACCTTCTCTTTGCCCGAGCCGTACGAGACCATAGGGTTAGGGCAAGTTCTGGACGCACTGGAAGGAACCGTGACACCAAGCAGTTCTTAAGTTCGAACCTAAGATCCTGCCGCATGCATCCCATGTTCAATGGCGTTCAAACGCAAGCCGATTACCACAGAAA

Full Affymetrix probeset data:

Annotations for 1624603_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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