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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624665_at:

>probe:Drosophila_2:1624665_at:505:419; Interrogation_Position=1012; Antisense; GAGCTTTCCGAGCAGAATGTCGACA
>probe:Drosophila_2:1624665_at:572:29; Interrogation_Position=1110; Antisense; ATACTCCATGGACGACTCATCGATC
>probe:Drosophila_2:1624665_at:580:645; Interrogation_Position=1126; Antisense; TCATCGATCTTGCTACCAGTTTTCA
>probe:Drosophila_2:1624665_at:398:523; Interrogation_Position=1160; Antisense; GGGCCTTTATACCACTGCTGTTCTG
>probe:Drosophila_2:1624665_at:491:603; Interrogation_Position=1178; Antisense; TGTTCTGCCTCTGCAAGCTGTGATC
>probe:Drosophila_2:1624665_at:290:539; Interrogation_Position=1239; Antisense; GGTTTCCTGCTTTGTGATTTTGTGA
>probe:Drosophila_2:1624665_at:306:469; Interrogation_Position=1308; Antisense; GTTACGCACTCCTTAGAGTTCGGTT
>probe:Drosophila_2:1624665_at:437:541; Interrogation_Position=1329; Antisense; GGTTCCCTTATTCCCAGGATGCAAA
>probe:Drosophila_2:1624665_at:440:77; Interrogation_Position=1344; Antisense; AGGATGCAAAGCTCTCTAACGCCCT
>probe:Drosophila_2:1624665_at:600:299; Interrogation_Position=1363; Antisense; CGCCCTGTACTTTCCATATTTGATA
>probe:Drosophila_2:1624665_at:126:247; Interrogation_Position=1391; Antisense; AATTCTTTTGTGTTCTTCTCGTTGA
>probe:Drosophila_2:1624665_at:686:501; Interrogation_Position=1424; Antisense; GTCCCAGGCTCGTGTACTTAATCGT
>probe:Drosophila_2:1624665_at:480:431; Interrogation_Position=1450; Antisense; GAGTCACTTGATTTCAATTCCCGGA
>probe:Drosophila_2:1624665_at:662:39; Interrogation_Position=1474; Antisense; ATCGTTTGACCGCTTGACTAGGACA

Paste this into a BLAST search page for me
GAGCTTTCCGAGCAGAATGTCGACAATACTCCATGGACGACTCATCGATCTCATCGATCTTGCTACCAGTTTTCAGGGCCTTTATACCACTGCTGTTCTGTGTTCTGCCTCTGCAAGCTGTGATCGGTTTCCTGCTTTGTGATTTTGTGAGTTACGCACTCCTTAGAGTTCGGTTGGTTCCCTTATTCCCAGGATGCAAAAGGATGCAAAGCTCTCTAACGCCCTCGCCCTGTACTTTCCATATTTGATAAATTCTTTTGTGTTCTTCTCGTTGAGTCCCAGGCTCGTGTACTTAATCGTGAGTCACTTGATTTCAATTCCCGGAATCGTTTGACCGCTTGACTAGGACA

Full Affymetrix probeset data:

Annotations for 1624665_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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