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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624705_a_at:

>probe:Drosophila_2:1624705_a_at:657:181; Interrogation_Position=2426; Antisense; AAAACAACACACTCTACACACATAT
>probe:Drosophila_2:1624705_a_at:343:359; Interrogation_Position=2461; Antisense; GCAACAATTGCAACTCGATGGTATT
>probe:Drosophila_2:1624705_a_at:644:439; Interrogation_Position=2477; Antisense; GATGGTATTGTTTACTCTTCCAAAA
>probe:Drosophila_2:1624705_a_at:165:393; Interrogation_Position=2531; Antisense; GAAAGGAACCGCTACCAGTACGATA
>probe:Drosophila_2:1624705_a_at:343:381; Interrogation_Position=2536; Antisense; GAACCGCTACCAGTACGATAGGAAG
>probe:Drosophila_2:1624705_a_at:654:51; Interrogation_Position=2572; Antisense; ATGGTTAGTAGGGATGGCATGCAAT
>probe:Drosophila_2:1624705_a_at:682:129; Interrogation_Position=2650; Antisense; ACGGAATGACGGCAATTAAGTTTAT
>probe:Drosophila_2:1624705_a_at:677:25; Interrogation_Position=2698; Antisense; ATAGTAATTTTGATTCTCGTGTGCA
>probe:Drosophila_2:1624705_a_at:438:179; Interrogation_Position=2771; Antisense; AAACATTATATACGCCCATTATGCA
>probe:Drosophila_2:1624705_a_at:347:673; Interrogation_Position=2781; Antisense; TACGCCCATTATGCATAAAGATGTG
>probe:Drosophila_2:1624705_a_at:599:143; Interrogation_Position=2859; Antisense; ACTGTATGTTGGTTCTTTTATTATA
>probe:Drosophila_2:1624705_a_at:239:515; Interrogation_Position=2922; Antisense; GTGTATTATGATTTTGCTAACCAAA
>probe:Drosophila_2:1624705_a_at:265:185; Interrogation_Position=2944; Antisense; AAAATCCCTTAGTATGAGATGCTCA
>probe:Drosophila_2:1624705_a_at:227:427; Interrogation_Position=2959; Antisense; GAGATGCTCATCGATATTTCACCCC

Paste this into a BLAST search page for me
AAAACAACACACTCTACACACATATGCAACAATTGCAACTCGATGGTATTGATGGTATTGTTTACTCTTCCAAAAGAAAGGAACCGCTACCAGTACGATAGAACCGCTACCAGTACGATAGGAAGATGGTTAGTAGGGATGGCATGCAATACGGAATGACGGCAATTAAGTTTATATAGTAATTTTGATTCTCGTGTGCAAAACATTATATACGCCCATTATGCATACGCCCATTATGCATAAAGATGTGACTGTATGTTGGTTCTTTTATTATAGTGTATTATGATTTTGCTAACCAAAAAAATCCCTTAGTATGAGATGCTCAGAGATGCTCATCGATATTTCACCCC

Full Affymetrix probeset data:

Annotations for 1624705_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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