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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624736_a_at:

>probe:Drosophila_2:1624736_a_at:501:69; Interrogation_Position=2582; Antisense; ATGGCCGACAGCGTGGAGTTCCTCA
>probe:Drosophila_2:1624736_a_at:696:469; Interrogation_Position=2599; Antisense; GTTCCTCACTGATCCAGAGTATGAC
>probe:Drosophila_2:1624736_a_at:44:225; Interrogation_Position=2659; Antisense; AAGGAAGCCAAAGCCACCAGTTCTT
>probe:Drosophila_2:1624736_a_at:427:169; Interrogation_Position=2699; Antisense; AAAGTGAGTGCCCAGGTCTACACAC
>probe:Drosophila_2:1624736_a_at:590:157; Interrogation_Position=2720; Antisense; ACACTGCAGCAGAGTCCGGTTTTGG
>probe:Drosophila_2:1624736_a_at:576:587; Interrogation_Position=2748; Antisense; TGGATCCCGCCATCGAGGACTACTT
>probe:Drosophila_2:1624736_a_at:314:75; Interrogation_Position=2763; Antisense; AGGACTACTTCAGTGCGGCCAGGAA
>probe:Drosophila_2:1624736_a_at:339:443; Interrogation_Position=2831; Antisense; GATGAGCCCGAACTGAAGTCCTTGC
>probe:Drosophila_2:1624736_a_at:433:505; Interrogation_Position=2848; Antisense; GTCCTTGCCGGACGATAATCGATCA
>probe:Drosophila_2:1624736_a_at:66:205; Interrogation_Position=2927; Antisense; AAGCGCAAGAATTCGACTAGTCGTC
>probe:Drosophila_2:1624736_a_at:557:609; Interrogation_Position=2955; Antisense; TGAGCGGTAGCTTCACGGCAGCAAA
>probe:Drosophila_2:1624736_a_at:588:305; Interrogation_Position=3019; Antisense; CCTGGTTCACAAGCCCATGAGGGAG
>probe:Drosophila_2:1624736_a_at:415:529; Interrogation_Position=3039; Antisense; GGGAGACATTGTTTTAGGCCACATA
>probe:Drosophila_2:1624736_a_at:505:7; Interrogation_Position=3085; Antisense; ATTCCCAACATGTTAGACTTCGCAT

Paste this into a BLAST search page for me
ATGGCCGACAGCGTGGAGTTCCTCAGTTCCTCACTGATCCAGAGTATGACAAGGAAGCCAAAGCCACCAGTTCTTAAAGTGAGTGCCCAGGTCTACACACACACTGCAGCAGAGTCCGGTTTTGGTGGATCCCGCCATCGAGGACTACTTAGGACTACTTCAGTGCGGCCAGGAAGATGAGCCCGAACTGAAGTCCTTGCGTCCTTGCCGGACGATAATCGATCAAAGCGCAAGAATTCGACTAGTCGTCTGAGCGGTAGCTTCACGGCAGCAAACCTGGTTCACAAGCCCATGAGGGAGGGGAGACATTGTTTTAGGCCACATAATTCCCAACATGTTAGACTTCGCAT

Full Affymetrix probeset data:

Annotations for 1624736_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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