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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624748_a_at:

>probe:Drosophila_2:1624748_a_at:146:465; Interrogation_Position=1351; Antisense; GATTGCTCAAATACCGCGACGCCTT
>probe:Drosophila_2:1624748_a_at:430:355; Interrogation_Position=1386; Antisense; GCAAATGCGGCGGACGTTATTCGTT
>probe:Drosophila_2:1624748_a_at:672:27; Interrogation_Position=1414; Antisense; ATACGTATCAGTGTCGTGATGACGA
>probe:Drosophila_2:1624748_a_at:90:73; Interrogation_Position=1450; Antisense; AGGAGCTATTGGACATTGCCAACGA
>probe:Drosophila_2:1624748_a_at:701:197; Interrogation_Position=1470; Antisense; AACGAGCTCATACCGTACGTGATGA
>probe:Drosophila_2:1624748_a_at:65:107; Interrogation_Position=1499; Antisense; AGAAAGTTCTGGTCATTCGGCGAGA
>probe:Drosophila_2:1624748_a_at:638:137; Interrogation_Position=1532; Antisense; ACGAGATTCTGAGGTTTTCGCCAAT
>probe:Drosophila_2:1624748_a_at:289:249; Interrogation_Position=1553; Antisense; CAATTTGCTGCGATTCTACGACGGC
>probe:Drosophila_2:1624748_a_at:174:437; Interrogation_Position=1593; Antisense; GAGGATAGCTTGACTCCCATTCTAC
>probe:Drosophila_2:1624748_a_at:30:405; Interrogation_Position=1604; Antisense; GACTCCCATTCTACACATTGGTTGG
>probe:Drosophila_2:1624748_a_at:457:541; Interrogation_Position=1623; Antisense; GGTTGGGCCAAACCACTGGTGAATA
>probe:Drosophila_2:1624748_a_at:128:467; Interrogation_Position=1658; Antisense; GTTCGATTACGACATTAGGTCCCAG
>probe:Drosophila_2:1624748_a_at:485:691; Interrogation_Position=1672; Antisense; TTAGGTCCCAGGTGGTCATCAAGTT
>probe:Drosophila_2:1624748_a_at:177:537; Interrogation_Position=1685; Antisense; GGTCATCAAGTTGCCCGAGGATCTG

Paste this into a BLAST search page for me
GATTGCTCAAATACCGCGACGCCTTGCAAATGCGGCGGACGTTATTCGTTATACGTATCAGTGTCGTGATGACGAAGGAGCTATTGGACATTGCCAACGAAACGAGCTCATACCGTACGTGATGAAGAAAGTTCTGGTCATTCGGCGAGAACGAGATTCTGAGGTTTTCGCCAATCAATTTGCTGCGATTCTACGACGGCGAGGATAGCTTGACTCCCATTCTACGACTCCCATTCTACACATTGGTTGGGGTTGGGCCAAACCACTGGTGAATAGTTCGATTACGACATTAGGTCCCAGTTAGGTCCCAGGTGGTCATCAAGTTGGTCATCAAGTTGCCCGAGGATCTG

Full Affymetrix probeset data:

Annotations for 1624748_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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