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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624798_s_at:

>probe:Drosophila_2:1624798_s_at:292:387; Interrogation_Position=2943; Antisense; GAAACATGATTTCCTTGAAAAGTTT
>probe:Drosophila_2:1624798_s_at:706:699; Interrogation_Position=2965; Antisense; TTTTTATACAAAATATCGTCCGAAT
>probe:Drosophila_2:1624798_s_at:606:679; Interrogation_Position=2978; Antisense; TATCGTCCGAATTAGTTGTTGTCAC
>probe:Drosophila_2:1624798_s_at:306:303; Interrogation_Position=2984; Antisense; CCGAATTAGTTGTTGTCACTCTGTA
>probe:Drosophila_2:1624798_s_at:600:467; Interrogation_Position=2992; Antisense; GTTGTTGTCACTCTGTAATATTTAA
>probe:Drosophila_2:1624798_s_at:482:389; Interrogation_Position=3112; Antisense; GAAACAACTTTGTCGTACTGAAGCA
>probe:Drosophila_2:1624798_s_at:435:147; Interrogation_Position=3118; Antisense; ACTTTGTCGTACTGAAGCATAACAT
>probe:Drosophila_2:1624798_s_at:337:479; Interrogation_Position=3247; Antisense; GTTTCTTATTAGAATTTCAGGGCAT
>probe:Drosophila_2:1624798_s_at:47:19; Interrogation_Position=3260; Antisense; ATTTCAGGGCATATAGGCGTGTAAA
>probe:Drosophila_2:1624798_s_at:411:21; Interrogation_Position=3387; Antisense; ATATTGATACTATTGTTTACCGAAA
>probe:Drosophila_2:1624798_s_at:691:247; Interrogation_Position=3472; Antisense; AATTGATTAATTTGCATTGCGCGAG
>probe:Drosophila_2:1624798_s_at:506:709; Interrogation_Position=3478; Antisense; TTAATTTGCATTGCGCGAGCTCCAT
>probe:Drosophila_2:1624798_s_at:203:323; Interrogation_Position=3490; Antisense; GCGCGAGCTCCATTCATTGTAAATT
>probe:Drosophila_2:1624798_s_at:634:707; Interrogation_Position=3513; Antisense; TTACGATTCGTATTAATACCATGAG

Paste this into a BLAST search page for me
GAAACATGATTTCCTTGAAAAGTTTTTTTTATACAAAATATCGTCCGAATTATCGTCCGAATTAGTTGTTGTCACCCGAATTAGTTGTTGTCACTCTGTAGTTGTTGTCACTCTGTAATATTTAAGAAACAACTTTGTCGTACTGAAGCAACTTTGTCGTACTGAAGCATAACATGTTTCTTATTAGAATTTCAGGGCATATTTCAGGGCATATAGGCGTGTAAAATATTGATACTATTGTTTACCGAAAAATTGATTAATTTGCATTGCGCGAGTTAATTTGCATTGCGCGAGCTCCATGCGCGAGCTCCATTCATTGTAAATTTTACGATTCGTATTAATACCATGAG

Full Affymetrix probeset data:

Annotations for 1624798_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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