FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624890_s_at:

>probe:Drosophila_2:1624890_s_at:277:389; Interrogation_Position=1126; Antisense; GAAACAAGATGCTCGGCAGCGCCTT
>probe:Drosophila_2:1624890_s_at:725:351; Interrogation_Position=1141; Antisense; GCAGCGCCTTGGACGGACCACAAAA
>probe:Drosophila_2:1624890_s_at:431:559; Interrogation_Position=1204; Antisense; GGACAAATCCATTCAACAGACCCGC
>probe:Drosophila_2:1624890_s_at:708:319; Interrogation_Position=1274; Antisense; GCCCCTGCCATTTATCAACGGATAC
>probe:Drosophila_2:1624890_s_at:313:455; Interrogation_Position=1294; Antisense; GATACTTCGGATCGAGCAACGCGCG
>probe:Drosophila_2:1624890_s_at:555:381; Interrogation_Position=1424; Antisense; GAACAGCGTCTTCTATCCCGATGTC
>probe:Drosophila_2:1624890_s_at:108:303; Interrogation_Position=1455; Antisense; CCGGGAGCGGCCAACAATAATCACA
>probe:Drosophila_2:1624890_s_at:606:247; Interrogation_Position=1469; Antisense; CAATAATCACAGCACCGTCAACGGT
>probe:Drosophila_2:1624890_s_at:82:123; Interrogation_Position=1504; Antisense; AGCGTCGCCAGGTCAAAGCACTGGA
>probe:Drosophila_2:1624890_s_at:611:111; Interrogation_Position=1520; Antisense; AGCACTGGAGGAGTTCGCACGCAAC
>probe:Drosophila_2:1624890_s_at:237:259; Interrogation_Position=1545; Antisense; CACGAGCGCTTTCGCAGGGAACTGA
>probe:Drosophila_2:1624890_s_at:584:195; Interrogation_Position=1564; Antisense; AACTGATGCCGGATGTGTCCGCTTA
>probe:Drosophila_2:1624890_s_at:126:263; Interrogation_Position=1605; Antisense; CAGCCGCTCATCCAGTTGTGATGTA
>probe:Drosophila_2:1624890_s_at:599:475; Interrogation_Position=1659; Antisense; GTATTACCCGTTTTGTGCTAAATCA

Paste this into a BLAST search page for me
GAAACAAGATGCTCGGCAGCGCCTTGCAGCGCCTTGGACGGACCACAAAAGGACAAATCCATTCAACAGACCCGCGCCCCTGCCATTTATCAACGGATACGATACTTCGGATCGAGCAACGCGCGGAACAGCGTCTTCTATCCCGATGTCCCGGGAGCGGCCAACAATAATCACACAATAATCACAGCACCGTCAACGGTAGCGTCGCCAGGTCAAAGCACTGGAAGCACTGGAGGAGTTCGCACGCAACCACGAGCGCTTTCGCAGGGAACTGAAACTGATGCCGGATGTGTCCGCTTACAGCCGCTCATCCAGTTGTGATGTAGTATTACCCGTTTTGTGCTAAATCA

Full Affymetrix probeset data:

Annotations for 1624890_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720