Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1624892_s_at:

>probe:Drosophila_2:1624892_s_at:240:5; Interrogation_Position=1031; Antisense; ATTGATTTCCAATACACGGCCTGGG
>probe:Drosophila_2:1624892_s_at:318:315; Interrogation_Position=1060; Antisense; GCCGGCACTTGATCTGTTTTACTTC
>probe:Drosophila_2:1624892_s_at:670:475; Interrogation_Position=1075; Antisense; GTTTTACTTCATGAACTCCTCGTTG
>probe:Drosophila_2:1624892_s_at:437:293; Interrogation_Position=1095; Antisense; CGTTGGAGTTCGATCTTCATCAGAA
>probe:Drosophila_2:1624892_s_at:519:419; Interrogation_Position=1127; Antisense; GAGCAGCTGATTGCCTACTACTTTA
>probe:Drosophila_2:1624892_s_at:51:183; Interrogation_Position=1174; Antisense; AAAACTGCAGTACCGATCCACAATT
>probe:Drosophila_2:1624892_s_at:106:163; Interrogation_Position=1193; Antisense; ACAATTCCAAGCTTGCATCAGTTCC
>probe:Drosophila_2:1624892_s_at:392:35; Interrogation_Position=1209; Antisense; ATCAGTTCCACCAGCAATTGCAGCA
>probe:Drosophila_2:1624892_s_at:460:109; Interrogation_Position=1233; Antisense; AGAAGAAATTCTACGCTGCCCACAC
>probe:Drosophila_2:1624892_s_at:539:43; Interrogation_Position=1258; Antisense; ATCCATTTCGGTGTTTCCAGTTCAG
>probe:Drosophila_2:1624892_s_at:56:265; Interrogation_Position=1299; Antisense; CAGATGCCGATTTTAATGCCCTAAT
>probe:Drosophila_2:1624892_s_at:308:453; Interrogation_Position=1387; Antisense; GATCTTGCGGGAACTTCTGCCTGAT
>probe:Drosophila_2:1624892_s_at:612:99; Interrogation_Position=1420; Antisense; AGAGGGTCTTCTTGATGCCGACCAG
>probe:Drosophila_2:1624892_s_at:331:113; Interrogation_Position=999; Antisense; AGCAGACCGGTGAGCCAATTGACGT

Paste this into a BLAST search page for me
ATTGATTTCCAATACACGGCCTGGGGCCGGCACTTGATCTGTTTTACTTCGTTTTACTTCATGAACTCCTCGTTGCGTTGGAGTTCGATCTTCATCAGAAGAGCAGCTGATTGCCTACTACTTTAAAAACTGCAGTACCGATCCACAATTACAATTCCAAGCTTGCATCAGTTCCATCAGTTCCACCAGCAATTGCAGCAAGAAGAAATTCTACGCTGCCCACACATCCATTTCGGTGTTTCCAGTTCAGCAGATGCCGATTTTAATGCCCTAATGATCTTGCGGGAACTTCTGCCTGATAGAGGGTCTTCTTGATGCCGACCAGAGCAGACCGGTGAGCCAATTGACGT

Full Affymetrix probeset data:

Annotations for 1624892_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime